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Python modules useful for TnSeq analysis and other tasks.

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Tools

Repository of the various python modules I use.

  • go_tools: Used to parse GeneOntology.org ".obo" files that define the ontology. Helpful for iterating to GO terms. Note: Not very efficient.
  • stat_tools: Contains certain useful tools. Regression, Benajamini-Hochberg, Resampling, etc.
  • norm_tools: Defines methods for defining read-counts.
  • transit_tools: Some tools used by transit. Useful for handling TnSeq data.

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Python modules useful for TnSeq analysis and other tasks.

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