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Bump the python-requirements group across 1 directory with 8 updates#16

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Bump the python-requirements group across 1 directory with 8 updates#16
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Bumps the python-requirements group with 8 updates in the /envs directory:

Package From To
simpleitk 2.5.0 2.5.2
coverage 7.8.2 7.9.1
monai 1.4.0 1.5.0
pandas 2.2.3 2.3.0
pytest-cov 6.1.1 6.2.1
pytest 8.3.5 8.4.0
ruff 0.11.12 0.11.13
wandb 0.19.11 0.20.1

Updates simpleitk from 2.5.0 to 2.5.2

Release notes

Sourced from simpleitk's releases.

Release v2.5.2

To upgrade to this Python binary package run: pip install --upgrade --pre simpleitk --find-links https://github.com/SimpleITK/SimpleITK/releases/tag/v2.5.2

What's Changed

Full Changelog: SimpleITK/SimpleITK@v2.5.0...v2.5.2

Commits
  • 2018b6b Update version to 2.5.2
  • f4f47df Merge pull request #2319 from blowekamp/release_ITK_5_4_4
  • 392ab24 Update ITK Superbuild version to 5.4.4
  • a4c5c44 Merge pull request #2306 from blowekamp/fix_docker_as
  • 756b401 Fix Docker FromAsCasing error for Doxygen
  • 2f12793 Merge pull request #2294 from blowekamp/image_series_reader_options
  • ad34fae Add ForceOrthogonalDirection and ReverseOrder options
  • See full diff in compare view

Updates coverage from 7.8.2 to 7.9.1

Changelog

Sourced from coverage's changelog.

Version 7.9.1 — 2025-06-13

  • The "no-ctracer" warning is not issued for Python pre-release versions. Coverage doesn't ship compiled wheels for those versions, so this was far too noisy.

  • On Python 3.14+, the "sysmon" core is now the default if it's supported for your configuration. Plugins and dynamic contexts are still not supported with it.

.. _changes_7-9-0:

Version 7.9.0 — 2025-06-11

  • Added a [run] core configuration setting to specify the measurement core, which was previously only available through the COVERAGE_CORE environment variable. Finishes issue 1746_.

  • Fixed incorrect rendering of f-strings with doubled braces, closing issue 1980_.

  • If the C tracer core can't be imported, a warning ("no-ctracer") is issued with the reason.

  • The C tracer core extension module now conforms to PEP 489, closing issue 1977. Thanks, Adam Turner <pull 1978_>_.

  • Fixed a "ValueError: min() arg is an empty sequence" error caused by strange empty modules, found by oss-fuzz_.

.. _issue 1746: nedbat/coveragepy#1746 .. _issue 1977: nedbat/coveragepy#1977 .. _pull 1978: nedbat/coveragepy#1978 .. _issue 1980: nedbat/coveragepy#1980 .. _PEP 489: https://peps.python.org/pep-0489 .. _oss-fuzz: https://google.github.io/oss-fuzz/

.. _changes_7-8-2:

Commits
  • 4fa1b71 docs: sample HTML for 7.9.1
  • 5cf757b docs: prep for 7.9.1
  • bea6204 fix: better defaulting of core
  • 7795441 fix: fewer warnings, default to sys.monitoring on 3.14+
  • 18aa074 fix: some custom builds don't have file
  • 8c5bf65 chore: make upgrade
  • 128c4f4 build: bump version to 7.9.1
  • 452d86f docs: sample HTML for 7.9.0
  • a670927 docs: prep for 7.9.0
  • 3b0cb87 build: windows 3.14 is fixed
  • Additional commits viewable in compare view

Updates monai from 1.4.0 to 1.5.0

Release notes

Sourced from monai's releases.

1.5.0

Added

  • Add platform-specific constraints to setup.cfg (#8260)
  • Add PythonicWorkflow (#8151)
  • Add SM architecture version check (#8199)
  • Add MedNext implementation (#8004)
  • Added a top button to CONSTRIBUTING.md (#8163)
  • Adding CODEOWNERS (#8457)
  • Restormer Implementation (#8312)
  • Add rectified flow noise scheduler for accelerated diffusion model (#8374)
  • Add prediction type for rflow scheduler (#8386)
  • Add Average Precision to metrics (#8089)
  • Implementation of a Masked Autoencoder for representation learning (#8152)
  • Implement TorchIO transforms wrapper analogous to TorchVision transfo… (#7579)
  • 8328 nnunet bundle integration (#8329)
  • Adding Support Policy + Doc Updates (#8458)
  • Classifier free guidance (#8460)

Fixed

  • Fix Ruff Numpy2 deprecation rules (#8179)
  • Fix torch.load() frequently warning in PersistentDataset and GDSDataset (#8177)
  • Fix the logging of a nested dictionary metric in MLflow (#8169)
  • Fix ImageFilter to allow Gaussian filter without filter_size (#8189)
  • Fix fold_constants, test_handler switched to onnx (#8211)
  • Fix TypeError in meshgrid (#8252)
  • Fix PatchMerging duplicate merging (#8285)
  • Fix test load image issue (#8297)
  • Fix bundle download error from ngc source (#8307)
  • Fix deprecated usage in zarr (#8313, #8477)
  • Fix DataFrame subsets indexing in CSVDataset() (#8351)
  • Fix packaging imports in version comparison logic (#8347)
  • Fix CommonKeys docstring (#8342)
  • Fix: correctly apply fftshift to real-valued data inputs (#8407)
  • Fix OptionalImportError: required package openslide is not installed (#8419)
  • Fix cosine noise scheduler (#8427)
  • Fix AutoencoderKL docstrings. (#8445)
  • Inverse Threading Fix (#8418)
  • Fix normalize intensity (#8286)
  • Fix path at test onnx trt export (#8361)
  • Fix broken urls (#8481, #8483)

Changed

  • [DOC] Update README.md (#8157)
  • Streamlined Rearrange in SpatialAttentionBlock (#8130)
  • Optimize VISTA3D (#8123)
  • Skip torch trt convert test with torch newer than or equal to 2.5.0 (#8165)
  • Enable redirection of all loggers by configuring a FileHandler within the bundle (#8142)
  • Apply pyupgrade fixes for Python 3.9+ syntax (#8150)
  • Update base image to 2410 (#8164)
  • TRT support for MAISI (#8153)

... (truncated)

Changelog

Sourced from monai's changelog.

[1.5.0] - 2025-06-13

What's Changed

Added

  • Add platform-specific constraints to setup.cfg (#8260)
  • Add PythonicWorkflow (#8151)
  • Add SM architecture version check (#8199)
  • Add MedNext implementation (#8004)
  • Added a top button to CONSTRIBUTING.md (#8163)
  • Adding CODEOWNERS (#8457)
  • Restormer Implementation (#8312)
  • Add rectified flow noise scheduler for accelerated diffusion model (#8374)
  • Add prediction type for rflow scheduler (#8386)
  • Add Average Precision to metrics (#8089)
  • Implementation of a Masked Autoencoder for representation learning (#8152)
  • Implement TorchIO transforms wrapper analogous to TorchVision transfo… (#7579)
  • 8328 nnunet bundle integration (#8329)
  • Adding Support Policy + Doc Updates (#8458)
  • Classifier free guidance (#8460)

Fixed

  • Fix Ruff Numpy2 deprecation rules (#8179)
  • Fix torch.load() frequently warning in PersistentDataset and GDSDataset (#8177)
  • Fix the logging of a nested dictionary metric in MLflow (#8169)
  • Fix ImageFilter to allow Gaussian filter without filter_size (#8189)
  • Fix fold_constants, test_handler switched to onnx (#8211)
  • Fix TypeError in meshgrid (#8252)
  • Fix PatchMerging duplicate merging (#8285)
  • Fix test load image issue (#8297)
  • Fix bundle download error from ngc source (#8307)
  • Fix deprecated usage in zarr (#8313, #8477)
  • Fix DataFrame subsets indexing in CSVDataset() (#8351)
  • Fix packaging imports in version comparison logic (#8347)
  • Fix CommonKeys docstring (#8342)
  • Fix: correctly apply fftshift to real-valued data inputs (#8407)
  • Fix OptionalImportError: required package openslide is not installed (#8419)
  • Fix cosine noise scheduler (#8427)
  • Fix AutoencoderKL docstrings. (#8445)
  • Inverse Threading Fix (#8418)
  • Fix normalize intensity (#8286)
  • Fix path at test onnx trt export (#8361)
  • Fix broken urls (#8481, #8483)

Changed

  • [DOC] Update README.md (#8157)
  • Streamlined Rearrange in SpatialAttentionBlock (#8130)
  • Optimize VISTA3D (#8123)
  • Skip torch trt convert test with torch newer than or equal to 2.5.0 (#8165)
  • Enable redirection of all loggers by configuring a FileHandler within the bundle (#8142)
  • Apply pyupgrade fixes for Python 3.9+ syntax (#8150)

... (truncated)

Commits

Updates pandas from 2.2.3 to 2.3.0

Release notes

Sourced from pandas's releases.

Pandas 2.3.0

We are pleased to announce the release of pandas 2.3.0. This release includes some new features, bug fixes, and performance improvements. We recommend that all users upgrade to this version.

See the full whatsnew for a list of all the changes. Pandas 2.3.0 supports Python 3.10 and higher.

The release will be available on the defaults and conda-forge channels:

conda install -c conda-forge pandas

Or via PyPI:

python3 -m pip install --upgrade pandas

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Commits

Updates pytest-cov from 6.1.1 to 6.2.1

Changelog

Sourced from pytest-cov's changelog.

6.2.1 (2025-06-12)

  • Added a version requirement for pytest's pluggy dependency (1.2.0, released 2023-06-21) that has the required new-style hookwrapper API.

  • Removed deprecated license classifier (packaging).

  • Disabled coverage warnings in two more situations where they have no value:

    • "module-not-measured" in workers
    • "already-imported" in subprocesses

6.2.0 (2025-06-11)

  • The plugin now adds 3 rules in the filter warnings configuration to prevent common coverage warnings being raised as obscure errors::

    default:unclosed database in <sqlite3.Connection object at:ResourceWarning once::PytestCovWarning once::CoverageWarning

    This fixes most of the bad interactions that are occurring on pytest 8.4 with filterwarnings=error.

    The plugin will check if there already matching rules for the 3 categories (ResourceWarning, PytestCovWarning, CoverageWarning) and message (unclosed database in <sqlite3.Connection object at) before adding the filters.

    This means you can have this in your pytest configuration for complete oblivion (not recommended, if that is not clear)::

    filterwarnings = [ "error", "ignore:unclosed database in <sqlite3.Connection object at:ResourceWarning", "ignore::PytestCovWarning", "ignore::CoverageWarning", ]

Commits
  • 55dbe43 Bump version: 6.2.0 → 6.2.1
  • d17e9b7 Update changelog.
  • 8964ab7 Add a note for this warning disable.
  • e932e41 Prevent unimported warnings @ pytest-xdist workers
  • 573379b Bring pytest-cov's suprocess management in line with coverage's process_start...
  • f1884e8 Fix xdist pin.
  • 512c669 Added minium version requirements for pluggin (for new-style hookwrappers). P...
  • 629ba64 Remove deprecated license classifier.
  • dca5723 Bump version: 6.1.1 → 6.2.0
  • f69166a Also trigger the sqlite warning.
  • Additional commits viewable in compare view

Updates pytest from 8.3.5 to 8.4.0

Release notes

Sourced from pytest's releases.

8.4.0

pytest 8.4.0 (2025-06-02)

Removals and backward incompatible breaking changes

  • #11372: Async tests will now fail, instead of warning+skipping, if you don't have any suitable plugin installed.

  • #12346: Tests will now fail, instead of raising a warning, if they return any value other than None.

  • #12874: We dropped support for Python 3.8 following its end of life (2024-10-07).

  • #12960: Test functions containing a yield now cause an explicit error. They have not been run since pytest 4.0, and were previously marked as an expected failure and deprecation warning.

    See the docs <yield tests deprecated>{.interpreted-text role="ref"} for more information.

Deprecations (removal in next major release)

  • #10839: Requesting an asynchronous fixture without a [pytest_fixture_setup]{.title-ref} hook that resolves it will now give a DeprecationWarning. This most commonly happens if a sync test requests an async fixture. This should have no effect on a majority of users with async tests or fixtures using async pytest plugins, but may affect non-standard hook setups or autouse=True. For guidance on how to work around this warning see sync-test-async-fixture{.interpreted-text role="ref"}.

New features

  • #11538: Added pytest.RaisesGroup{.interpreted-text role="class"} as an equivalent to pytest.raises{.interpreted-text role="func"} for expecting ExceptionGroup{.interpreted-text role="exc"}. Also adds pytest.RaisesExc{.interpreted-text role="class"} which is now the logic behind pytest.raises{.interpreted-text role="func"} and used as parameter to pytest.RaisesGroup{.interpreted-text role="class"}. RaisesGroup includes the ability to specify multiple different expected exceptions, the structure of nested exception groups, and flags for emulating except* <except_star>{.interpreted-text role="ref"}. See assert-matching-exception-groups{.interpreted-text role="ref"} and docstrings for more information.

  • #12081: Added capteesys{.interpreted-text role="fixture"} to capture AND pass output to next handler set by --capture=.

  • #12504: pytest.mark.xfail{.interpreted-text role="func"} now accepts pytest.RaisesGroup{.interpreted-text role="class"} for the raises parameter when you expect an exception group. You can also pass a pytest.RaisesExc{.interpreted-text role="class"} if you e.g. want to make use of the check parameter.

  • #12713: New [--force-short-summary]{.title-ref} option to force condensed summary output regardless of verbosity level.

    This lets users still see condensed summary output of failures for quick reference in log files from job outputs, being especially useful if non-condensed output is very verbose.

  • #12749: pytest traditionally collects classes/functions in the test module namespace even if they are imported from another file.

    For example:

    # contents of src/domain.py
class Testament: ...
contents of tests/test_testament.py
from domain import Testament
def test_testament(): ...

    In this scenario with the default options, pytest will collect the class [Testament]{.title-ref} from [tests/test_testament.py]{.title-ref} because it starts with [Test]{.title-ref}, even though in this case it is a production class being imported in the test module namespace.

    This behavior can now be prevented by setting the new collect_imported_tests{.interpreted-text role="confval"} configuration option to false, which will make pytest collect classes/functions from test files only if they are defined in that file.

... (truncated)

Commits
  • 315b3ae Prepare release version 8.4.0
  • 1498ba3 Merge pull request #13467 from pytest-dev/towncrier-create
  • e4389ac Remove resultlog from the docs (#13465)
  • 64b2301 scripts/release: add missing build to towncrier call
  • 4c205cf testing/plugins_integration: update Django (#13463)
  • 4dcbcc9 Merge pull request #13458 from pytest-dev/dup-param-error
  • 5293016 Merge pull request #13459 from pytest-dev/pyright-minor-fixes
  • 7a48181 Add pyright configuration
  • 9fc6db9 pytester: avoid confusing x self parameter
  • 9aa198b mark/expression: fix self -> cls
  • Additional commits viewable in compare view

Updates ruff from 0.11.12 to 0.11.13

Release notes

Sourced from ruff's releases.

0.11.13

Release Notes

Preview features

  • [airflow] Add unsafe fix for module moved cases (AIR301,AIR311,AIR312,AIR302) (#18367,#18366,#18363,#18093)
  • [refurb] Add coverage of set and frozenset calls (FURB171) (#18035)
  • [refurb] Mark FURB180 fix unsafe when class has bases (#18149)

Bug fixes

  • [perflint] Fix missing parentheses for lambda and ternary conditions (PERF401, PERF403) (#18412)
  • [pyupgrade] Apply UP035 only on py313+ for get_type_hints() (#18476)
  • [pyupgrade] Make fix unsafe if it deletes comments (UP004,UP050) (#18393, #18390)

Rule changes

  • [fastapi] Avoid false positive for class dependencies (FAST003) (#18271)

Documentation

  • Update editor setup docs for Neovim and Vim (#18324)

Other changes

  • Support Python 3.14 template strings (t-strings) in formatter and parser (#17851)

Contributors

... (truncated)

Changelog

Sourced from ruff's changelog.

0.11.13

Preview features

  • [airflow] Add unsafe fix for module moved cases (AIR301,AIR311,AIR312,AIR302) (#18367,#18366,#18363,#18093)
  • [refurb] Add coverage of set and frozenset calls (FURB171) (#18035)
  • [refurb] Mark FURB180 fix unsafe when class has bases (#18149)

Bug fixes

  • [perflint] Fix missing parentheses for lambda and ternary conditions (PERF401, PERF403) (#18412)
  • [pyupgrade] Apply UP035 only on py313+ for get_type_hints() (#18476)
  • [pyupgrade] Make fix unsafe if it deletes comments (UP004,UP050) (#18393, #18390)

Rule changes

  • [fastapi] Avoid false positive for class dependencies (FAST003) (#18271)

Documentation

  • Update editor setup docs for Neovim and Vim (#18324)

Other changes

  • Support Python 3.14 template strings (t-strings) in formatter and parser (#17851)
Commits
  • 5faf72a Bump 0.11.13 (#18484)
  • 28dbc5c [ty] Fix completion order in playground (#18480)
  • ce216c7 Remove Message::to_rule (#18447)
  • 33468cc [pyupgrade] Apply UP035 only on py313+ for get_type_hints() (#18476)
  • 8531f4b [ty] Add infrastructure for AST garbage collection (#18445)
  • 5510020 [ty] IDE: add support for object.\<CURSOR> completions (#18468)
  • c0bb83b [perflint] fix missing parentheses for lambda and ternary conditions (PERF4...
  • 74a4e9a Combine lint and syntax error handling (#18471)
  • 8485dbb [ty] Fix --python argument for Windows, and improve error messages for bad ...
  • 0858896 [ty] type narrowing by attribute/subscript assignments (#18041)
  • Additional commits viewable in compare view

Updates wandb from 0.19.11 to 0.20.1

Release notes

Sourced from wandb's releases.

v0.20.1

What's Changed

Fixed

v0.20.0

What's Changed

  • wandb.Table: Added new constructor param, log_mode, with options "IMMUTABLE" and "MUTABLE". IMMUTABLE log mode (default) is existing behavior that only allows a table to be logged once. MUTABLE log mode allows the table to be logged again if it has been mutated. (@​domphan-wandb in wandb/wandb#9758)
  • wandb.Table: Added a new log_mode, "INCREMENTAL", which logs newly added table data incrementally. (@​domphan-wandb in wandb/wandb#9810)

Notable Changes

This version removes the ability to disable the service process. This is a breaking change.

Added

  • Added merge parameter to Artifact.add_dir to allow overwrite of previously-added artifact files (@​pingleiwandb in wandb/wandb#9907)
  • Support for pytorch.tensor for masks and boxes parameters when creating a wandb.Image object. (@​jacobromero in wandb/wandb#9802)
  • sync_tensorboard now supports syncing tfevents files stored in S3, GCS and Azure (@​timoffex in wandb/wandb#9849)
    • GCS paths use the format gs://bucket/path/to/log/dir and rely on application-default credentials, which can be configured using gcloud auth application-default login
    • S3 paths use the format s3://bucket/path/to/log/dir and rely on the default credentials set through aws configure
    • Azure paths use the format az://account/container/path/to/log/dir and the az login credentials, but also require the AZURE_STORAGE_ACCOUNT and AZURE_STORAGE_KEY environment variables to be set. Some other environment variables are supported as well, see here.
  • Added support for initializing some Media objects with pathlib.Path (@​jacobromero in wandb/wandb#9692)
  • New setting x_skip_transaction_log that allows to skip the transaction log. Note: Should be used with caution, as it removes the gurantees about recoverability. (@​kptkin in wandb/wandb#9064)
  • normalize parameter to wandb.Image initialization to normalize pixel values for Images initialized with a numpy array or pytorch tensor. (@​jacobromero in wandb/wandb#9883)

Changed

  • Various APIs now raise TypeError instead of ValueError or other generic errors when given an argument of the wrong type. (@​timoffex in wandb/wandb#9902)
  • Various Artifacts and Automations APIs now raise CommError instead of ValueError upon encountering server errors, so as to surface the server error message. (@​ibindlish in wandb/wandb#9933)
  • wandb.sdk.wandb_run.Run::save method now requires the glob_str argument (@​dmitryduev in wandb/wandb#9962)

Removed

  • Removed support for disabling the service process. The x_disable_service/_disable_service setting and the WANDB_DISABLE_SERVICE/WANDB_X_DISABLE_SERVICE environment variable have been deprecated and will now raise an error if used (@​kptkin in wandb/wandb#9829)
  • Removed ability to use wandb.docker after only importing wandb (@​timoffex in wandb/wandb#9941)
    • wandb.docker is not part of wandb's public interface and is subject to breaking changes. Please do not use it.
  • Removed no-op sync argument from wandb.Run::log function (@​kptkin in wandb/wandb#9940)
  • Removed deprecated wandb.sdk.wandb_run.Run.mode property (@​dmitryduev in wandb/wandb#9958)
  • Removed deprecated wandb.sdk.wandb_run.Run::join method (@​dmitryduev in wandb/wandb#9960)

Deprecated

  • The start_method setting is deprecated and has no effect; it is safely ignored (@​kptkin in wandb/wandb#9837)
  • The property Artifact.use_as and parameter use_as for run.use_artifact() are deprecated since these have not been in use for W&B Launch (@​ibindlish in wandb/wandb#9760)

... (truncated)

Changelog

Sourced from wandb's changelog.

[0.20.1] - 2025-06-04

Fixed

[0.20.0] - 2025-06-03

  • wandb.Table: Added new constructor param, log_mode, with options "IMMUTABLE" and "MUTABLE". IMMUTABLE log mode (default) is existing behavior that only allows a table to be logged once. MUTABLE log mode allows the table to be logged again if it has been mutated. (@​domphan-wandb in wandb/wandb#9758)
  • wandb.Table: Added a new log_mode, "INCREMENTAL", which logs newly added table data incrementally. (@​domphan-wandb in wandb/wandb#9810)

Notable Changes

This version removes the ability to disable the service process. This is a breaking change.

Added

  • Added merge parameter to Artifact.add_dir to allow overwrite of previously-added artifact files (@​pingleiwandb in wandb/wandb#9907)
  • Support for pytorch.tensor for masks and boxes parameters when creating a wandb.Image object. (@​jacobromero in wandb/wandb#9802)
  • sync_tensorboard now supports syncing tfevents files stored in S3, GCS and Azure (@​timoffex in wandb/wandb#9849)
    • GCS paths use the format gs://bucket/path/to/log/dir and rely on application-default credentials, which can be configured using gcloud auth application-default login
    • S3 paths use the format s3://bucket/path/to/log/dir and rely on the default credentials set through aws configure
    • Azure paths use the format az://account/container/path/to/log/dir and the az login credentials, but also require the AZURE_STORAGE_ACCOUNT and AZURE_STORAGE_KEY environment variables to be set. Some other environment variables are supported as well, see here.
  • Added support for initializing some Media objects with pathlib.Path (@​jacobromero in wandb/wandb#9692)
  • New setting x_skip_transaction_log that allows to skip the transaction log. Note: Should be used with caution, as it removes the gurantees about recoverability. (@​kptkin in wandb/wandb#9064)
  • normalize parameter to wandb.Image initialization to normalize pixel values for Images initialized with a numpy array or pytorch tensor. (@​jacobromero in wandb/wandb#9883)

Changed

  • Various APIs now raise TypeError instead of ValueError or other generic errors when given an argument of the wrong type. (@​timoffex in wandb/wandb#9902)
  • Various Artifacts and Automations APIs now raise CommError instead of ValueError upon encountering server errors, so as to surface the server error message. (@​ibindlish in wandb/wandb#9933)
  • wandb.sdk.wandb_run.Run::save method now requires the glob_str argument (@​dmitryduev in wandb/wandb#9962)

Removed

  • Removed support for disabling the service process. The x_disable_service/_disable_service setting and the WANDB_DISABLE_SERVICE/WANDB_X_DISABLE_SERVICE environment variable have been deprecated and will now raise an error if used (@​kptkin in wandb/wandb#9829)
  • Removed ability to use wandb.docker after only importing wandb (@​timoffex in wandb/wandb#9941)
    • wandb.docker is not part of wandb's public interface and is subject to breaking changes. Please do not use it.
  • Removed no-op sync argument from wandb.Run::log function (@​kptkin in wandb/wandb#9940)
  • Removed deprecated wandb.sdk.wandb_run.Run.mode property (@​dmitryduev in wandb/wandb#9958)
  • Removed deprecated wandb.sdk.wandb_run.Run::join method (@​dmitryduev in wandb/wandb#9960)

Deprecated

  • The start_method setting is deprecated and has no effect; it is safely ignored (@​kptkin in wandb/wandb#9837)
  • The property Artifact.use_as and parameter use_as for run.use_artifact() are deprecated since these have not been in use for W&B Launch (@​ibindlish in wandb/wandb#9760)

Fixed

  • Calling wandb.teardown() in a child of a process that called wandb.setup() no longer raises WandbServiceNotOwnedError (@​timoffex in wandb/wandb#9875)

... (truncated)

Commits
  • ac7f2ca Bump version and update CHANGELOG for release 0.20.1
  • 1f3c567 fix: restore original image normalization behavior (#9982)
  • c0d9bf2 Bump version and update CHANGELOG for release 0.20.0
  • 2540cbb chore: update windows runner to 2022 in release action (#9972)
  • d65d947 chore: do not capture import telemetry on asyncio (#9970)
  • 9484692 chore: make codecov ignore tools and tests (#9966)
  • cf37d37 chore: wandb.sdk.wandb_run.Run.save method requires glob_str argument (#9962)
  • 6bf9ef0 chore: remove deprecated Run::join method (#9960)
  • 6f16651 chore: remove deprecated Run.mode property (#9958)
  • 5d97a75 chore: bump tokio from 1.43.0 to 1.45.0 in /experimental/rust-sdk (#9885)
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@dependabot
Bump the python-requirements group across 1 directory with 8 updates
cea3097 
Bumps the python-requirements group with 8 updates in the /envs directory:

| Package | From | To |
| --- | --- | --- |
| [simpleitk](https://github.com/SimpleITK/SimpleITK) | `2.5.0` | `2.5.2` |
| [coverage](https://github.com/nedbat/coveragepy) | `7.8.2` | `7.9.1` |
| [monai](https://github.com/Project-MONAI/MONAI) | `1.4.0` | `1.5.0` |
| [pandas](https://github.com/pandas-dev/pandas) | `2.2.3` | `2.3.0` |
| [pytest-cov](https://github.com/pytest-dev/pytest-cov) | `6.1.1` | `6.2.1` |
| [pytest](https://github.com/pytest-dev/pytest) | `8.3.5` | `8.4.0` |
| [ruff](https://github.com/astral-sh/ruff) | `0.11.12` | `0.11.13` |
| [wandb](https://github.com/wandb/wandb) | `0.19.11` | `0.20.1` |



Updates `simpleitk` from 2.5.0 to 2.5.2
- [Release notes](https://github.com/SimpleITK/SimpleITK/releases)
- [Commits](SimpleITK/SimpleITK@v2.5.0...v2.5.2)

Updates `coverage` from 7.8.2 to 7.9.1
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](coveragepy/coveragepy@7.8.2...7.9.1)

Updates `monai` from 1.4.0 to 1.5.0
- [Release notes](https://github.com/Project-MONAI/MONAI/releases)
- [Changelog](https://github.com/Project-MONAI/MONAI/blob/dev/CHANGELOG.md)
- [Commits](Project-MONAI/MONAI@1.4.0...1.5.0)

Updates `pandas` from 2.2.3 to 2.3.0
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](pandas-dev/pandas@v2.2.3...v2.3.0)

Updates `pytest-cov` from 6.1.1 to 6.2.1
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-cov@v6.1.1...v6.2.1)

Updates `pytest` from 8.3.5 to 8.4.0
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.5...8.4.0)

Updates `ruff` from 0.11.12 to 0.11.13
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.11.12...0.11.13)

Updates `wandb` from 0.19.11 to 0.20.1
- [Release notes](https://github.com/wandb/wandb/releases)
- [Changelog](https://github.com/wandb/wandb/blob/main/CHANGELOG.md)
- [Commits](wandb/wandb@v0.19.11...v0.20.1)

---
updated-dependencies:
- dependency-name: simpleitk
  dependency-version: 2.5.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: coverage
  dependency-version: 7.9.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: monai
  dependency-version: 1.5.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: pandas
  dependency-version: 2.3.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: pytest-cov
  dependency-version: 6.2.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: pytest
  dependency-version: 8.4.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: ruff
  dependency-version: 0.11.13
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: wandb
  dependency-version: 0.20.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update python code labels Jun 16, 2025
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dependabot bot commented on behalf of github Jun 27, 2025

Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot bot closed this Jun 27, 2025
@dependabot dependabot bot deleted the dependabot/pip/envs/python-requirements-ed7e672893 branch June 27, 2025 14:22
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