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@medvir

Institute of Medical Virology

The Institute of Medical Virology (IMV) is part of the medical faculty of the University of Zurich.

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  1. VirMet VirMet Public

    Set of tools for viral metagenomics.

    Python 14 5

  2. MinVar MinVar Public

    A tool to detect minority variants in HIV-1 and HCV populations

    Python 1 6

  3. SmaltAlign SmaltAlign Public

    Quick iterative alignment of reads against a given reference using smalt.

    Shell 3 1

  4. EnvSeq EnvSeq Public

    Fully automated HIV-1 env plasmid sequencing analysis

    Python 1 1

  5. DMS DMS Public

    Infos and scripts for Data Management of Sequencing Data at the IMV

    Python 1 1

  6. virome-protocols virome-protocols Public

    version controlled protocols for virome sequencing

    1

Repositories

Showing 10 of 28 repositories
  • DMS Public

    Infos and scripts for Data Management of Sequencing Data at the IMV

    medvir/DMS’s past year of commit activity
    Python 1 MIT 1 3 0 Updated Jan 13, 2026
  • MinVar Public

    A tool to detect minority variants in HIV-1 and HCV populations

    medvir/MinVar’s past year of commit activity
    Python 1 6 8 0 Updated Jan 12, 2026
  • VirMet Public

    Set of tools for viral metagenomics.

    medvir/VirMet’s past year of commit activity
    Python 14 5 4 0 Updated Dec 12, 2025
  • EnvSeq Public

    Fully automated HIV-1 env plasmid sequencing analysis

    medvir/EnvSeq’s past year of commit activity
    Python 1 GPL-2.0 1 0 0 Updated Nov 17, 2025
  • VirMask Public

    VirMask is a computational tool designed to systematically mask non-viral elements (e.g., human, rRNA and other artifacts) within viral reference databases, as well as recurrently detected virus-derived sequences likely introduced during sample preparation or sequencing workflows. The ultimate goal is to improve reliability of viral mNGS diagnosis.

    medvir/VirMask’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 12, 2025
  • Coverage Public
    medvir/Coverage’s past year of commit activity
    R 0 0 0 0 Updated Aug 14, 2025
  • SmaltAlign Public

    Quick iterative alignment of reads against a given reference using smalt.

    medvir/SmaltAlign’s past year of commit activity
    Shell 3 MIT 1 6 0 Updated Jul 17, 2025
  • DiaMet Public
    medvir/DiaMet’s past year of commit activity
    Python 0 0 0 0 Updated Jul 15, 2025
  • v3seq Public

    V3 loop from sequencing data

    medvir/v3seq’s past year of commit activity
    Python 0 0 2 0 Updated Jun 19, 2025
  • multi-specificity Public

    Scripts for antibody sequence analysis for the multi-specificity paper

    medvir/multi-specificity’s past year of commit activity
    Python 0 0 0 0 Updated Jun 16, 2025
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