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1. NERDSS NERDSS Public

   NonEquilibrium Reaction-Diffusion Self-assembly Simulator

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2. StoichiometricBalance StoichiometricBalance Public

   Given 1) a protein interaction network, with interfaces resolved and 2) Copy numbers for some of the proteins, Quantify degree of stoichiometric balance in protein copy numbers

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3. KineticAssembly_AD KineticAssembly_AD Public

   Python code for numerical simulations of self-assemly with optimization by automatic differentiation

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4. multi_assembly multi_assembly Public

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5. FPR_rot FPR_rot Public

   Rotational rigid-body reaction-diffusion code

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6. ionerdss ionerdss Public

   Primarily python code for developing user-friendly analysis for model set-up (input) and analysis of output

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