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Nextstrain

Real-time tracking of pathogen evolution

212 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

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ncov ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 409
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 275 135
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 304 168

Repositories

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Showing 10 of 100 repositories

variant-nowcast-hub Public Forked from reichlab/variant-nowcast-hub
A repository to store COVID-19 variant nowcasts collected as a modeling hub.

nextstrain/variant-nowcast-hub’s past year of commit activity

R 0 MIT 16 0 0 Updated Dec 24, 2025
forecasts-flu Public
Seasonal influenza variant growth rates and frequency forecasts

nextstrain/forecasts-flu’s past year of commit activity

Python 1 MIT 0 2 1 Updated Dec 23, 2025
ebola Public
Nextstrain build for Ebola virus

nextstrain/ebola’s past year of commit activity

Python 4 9 6 2 Updated Dec 23, 2025
seasonal-flu Public
Scripts. config, and snakefiles for seasonal-flu nextstrain builds

nextstrain/seasonal-flu’s past year of commit activity

Python 56 29 33 9 Updated Dec 23, 2025
forecasts-viz Public

nextstrain/forecasts-viz’s past year of commit activity

JavaScript 2 0 6 4 Updated Dec 23, 2025
mpox Public
Nextstrain build for mpox virus

nextstrain/mpox’s past year of commit activity

Python 50 MIT 23 16 8 Updated Dec 23, 2025
.github Public

nextstrain/.github’s past year of commit activity

Shell 9 11 11 1 Updated Dec 23, 2025
nextclade_data Public
Datasets for https://github.com/nextstrain/nextclade

nextstrain/nextclade_data’s past year of commit activity

Python 42 41 9 18 Updated Dec 23, 2025
ncov Public
Nextstrain build for SARS-CoV-2

nextstrain/ncov’s past year of commit activity

Python 1,354 MIT 409 75 22 Updated Dec 23, 2025
measles Public
Nextstrain build for measles virus

nextstrain/measles’s past year of commit activity

Python 3 8 4 11 Updated Dec 23, 2025

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Python JavaScript Shell TypeScript Go

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nextstrain pathogen sars-cov-2 clades ncov

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