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Bump version post 2.0.0 release
Important! Template update for nf-core/tools v3.5.1
Important! Template update for nf-core/tools v3.5.1
…h-issue Document how to resolve KrakenUniq unbound variable jellyfish issue
add database build for [MetaCache](https://github.com/muellan/metacache):
…y.txt (code assistance by Claude Haiku, and documentation style reviewed by GPT 5.1 Codex Max against alpha nf-core style guide from @christopher-hakkaart)
Update utils_nfschema_pipeline to allow `--help`
Co-authored-by: Diego Alvarez S. <dialvarezs@gmail.com>
…-createtaxdb-input Add tutorial demonstrating how to convert a NCBI assembly_summary file to a nf-core/createtaxdb samplesheet
Bump version for Gracious Goblin (2.1.0) release
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.5.1. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
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Add PR labeller for estimating size of PRs
alxndrdiaz
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Feb 3, 2026
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Everything is working as expected and the documentation is up to date. The only comment that I have is that the Nextflow (25.10.3 but also occurs with previous versions) error, reported for other pipelines as well, keeps showing up in one of the tests:
Caused by:
java.util.ConcurrentModificationException
...
Error: Process completed with exit code 1.
vagkaratzas
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Feb 4, 2026
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Make sure that the font color on the input and output datasets in the metromap files are always white. Seem to be black and unreadable for dark mode png and svg (at least on my screen).
vagkaratzas
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Feb 4, 2026
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Straightforward! Minor changes and should be good to go.
Co-authored-by: Evangelos Karatzas <32259775+vagkaratzas@users.noreply.github.com>
vagkaratzas
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Feb 9, 2026
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Thanks @vagkaratzas ! |
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v2.1.0 - Gracious Goblin - [2026-02-04]
Addedassembly_summary.txtfile to input samplesheet (❤️ to @dialvarezs for improvements, by @jfy133)FixedDependencies