Fix fastANI module#9583

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Ethan-Hetrick wants to merge 46 commits intonf-core:masterfrom

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Commits on Dec 16, 2025

feat: updated fastANI module to include proper reference and query file staging, added task.cpus to thread arg, created process stub, added optional tool outputs, and formatted input channels
Ethan Hetrick
committed

Commits on Dec 17, 2025

refactor: modified input/output options for fastANI and added stub test
Ethan Hetrick
committed
chore: updated meta.yml
Ethan Hetrick
committed
Merge branch 'nf-core:master' into master
Ethan-Hetrick
authored
fix: corrected meta.yml
Ethan Hetrick
committed
fix: corrected file formats
Ethan Hetrick
committed
fix: added newline
Ethan Hetrick
committed
fix: attempt 2 at fixing whitespaces
Ethan Hetrick
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fix: attempt 3 at fixing whitespaces
Ethan Hetrick
committed
fix: formatting
Ethan Hetrick
committed

Commits on Dec 23, 2025

Merge branch 'nf-core:master' into master
Ethan-Hetrick
authored
reverted changes to prefixes to properly accommodate a multi-way comparison
Ethan Hetrick
committed
Renamed test to be more descriptive
Ethan Hetrick
committed
Fixed whitespaces
Ethan Hetrick
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ran nf-test
Ethan Hetrick
committed

Commits on Jan 14, 2026

refactor: updated how tool version was output
Ethan Hetrick
committed
Merge branch 'master' into master
Ethan-Hetrick
authored
Update modules/nf-core/fastani/main.nf

Ethan-Hetrick
and
vagkaratzas
authored
fix: removed redundant tags in nf test script
Ethan Hetrick
committed
refactor: added new version syntax to stub as well
Ethan Hetrick
committed
fix: fixed snapshot to capture new version syntax
Ethan Hetrick
committed
feature: added all v all mode test
Ethan Hetrick
committed
chore: updated meta.yml to clarify input priority
Ethan Hetrick
committed
chore: fixed whitespaces
Ethan Hetrick
committed
chore: fixed whitespaces
Ethan Hetrick
committed
fix: addressed nf-core lint errors and updated fastani version
Ethan Hetrick
committed

Commits on Feb 12, 2026

Update modules/nf-core/fastani/tests/main.nf.test

Ethan-Hetrick
and
vagkaratzas
authored
Merge branch 'master' into master
Ethan-Hetrick
authored
fix: removed accidental commit
Ethan Hetrick
committed
fix: corrected improper version capture
Ethan Hetrick
committed
chore: update snapshot
Ethan Hetrick
committed
feature: made it to where query and reference lists contain both genomes
Ethan Hetrick
committed

Commits on Feb 13, 2026

Update modules/nf-core/fastani/meta.yml

Ethan-Hetrick
and
vagkaratzas
authored
Update modules/nf-core/fastani/meta.yml

Ethan-Hetrick
and
vagkaratzas
authored
Update modules/nf-core/fastani/meta.yml

Ethan-Hetrick
and
vagkaratzas
authored
Update modules/nf-core/fastani/main.nf

Ethan-Hetrick
and
vagkaratzas
authored
Update modules/nf-core/fastani/meta.yml

Ethan-Hetrick
and
vagkaratzas
authored
Update modules/nf-core/fastani/meta.yml

Ethan-Hetrick
and
vagkaratzas
authored
chore: cleanup directives at top of nf.test
Ethan Hetrick
committed
feature: added line count check for all v all mode
Ethan Hetrick
committed
chore: removed obsolete nf-tests
Ethan Hetrick
committed

Commits on Feb 14, 2026

Merge branch 'master' into master
vagkaratzas
authored