Move to nf-core sbwf QUILT

[LouisLeNezet]

PR checklist

Replace #219

The variantsMD5 of quilt output in test_all did change due to absence of BCFTOOLS_ANNOTATE in the QUILT sbwf.
This removed the annotation of the variants from ch:pos:ref:alt to .
The change in NA12878_P1000GP_Tquilt_SNP.txt is on the latter columns:
I don't know why only this sample and why the change for the RA_het_mismatches_rate_percent and AA_hom_mimatches_rate_percent

< GCsVAF 0 1398 0.001537 1397 1 0 0 1397 0 0 0 1 0 0.000 100.000 0.000 0.000000 0.165865 NA12878 null null quilt null
> GCsVAF 0 1398 0.001537 1397 1 0 0 1397 0 0 0 1 0 0.000 100.000 0.000 0.000000 0.046354 NA12878 null null quilt null

• This comment contains a description of changes (with reason).
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• Usage Documentation in docs/usage.md is updated.
• Output Documentation in docs/output.md is updated.
• CHANGELOG.md is updated.
• README.md is updated (including new tool citations and authors/contributors).

[nf-core-bot]

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