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Wrong calculation of FII

bugSomething isn't workingSomething isn't working

Status: Open.

#792 In nf-core/rnafusion;

· colsen opened on Feb 12, 2026

Transcript annotations in VCF are lost when data isn't found by FusionInspector

bugSomething isn't workingSomething isn't working

Status: Open.

#787 In nf-core/rnafusion;

· nvnieuwk opened on Jan 19, 2026

Single-end analysis not working

Status: Open.

#785 In nf-core/rnafusion;

· ahwanpandey opened on Dec 30, 2025

create index on "markduplicates" output BAM

Status: Open.

#784 In nf-core/rnafusion;

· ahwanpandey opened on Dec 30, 2025

When running a BAM input, ARRIBA_VISUALISATION and FUSIONINSPECTOR modules do not run

bugSomething isn't workingSomething isn't working

Status: Open.

#780 In nf-core/rnafusion;

· preethabalakrishnan opened on Nov 17, 2025

Process <code>RNAFUSION:FASTQ_ALIGN_STAR:STAR_ALIGN (test)</code> terminated with an error exit status (137)

bugSomething isn't workingSomething isn't working

Status: Open.

#777 In nf-core/rnafusion;

· kaischmid opened on Oct 21, 2025

Question about fastp trimming

Status: Open.

#776 In nf-core/rnafusion;

· KevinMer opened on Oct 20, 2025

When using --genomes_base the function exists_not_empty does not work properly

bugSomething isn't workingSomething isn't working

Status: Open.

#774 In nf-core/rnafusion;

· Proton-NTA opened on Oct 10, 2025

<code>FUSIONCATCHER</code> fails with out of memory error

bugSomething isn't workingSomething isn't working

Status: Open.

#773 In nf-core/rnafusion;

· bounlu opened on Sep 24, 2025

Reintegrate <code>QC_WORKFLOW</code> subworkflow into pipeline after migration to nf-core/subworkflows

Status: Open.

#755 In nf-core/rnafusion;

· atrigila opened on Aug 26, 2025

Reintegrate <code>FUSIONINSPECTOR</code> subworkflow into pipeline after migration to <code>nf-core/subworkflows</code>

Status: Open.

#754 In nf-core/rnafusion;

· atrigila opened on Aug 26, 2025

Replace <code>GENCODE_DOWNLOAD</code> for nf-core <code>WGET</code>

Status: Open.

Enhancement

#739 In nf-core/rnafusion;

· atrigila opened on Aug 8, 2025