Skip to content

Test pull request by adding a line in README #1

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closed
matbonfanti wants to merge 3 commits into from
Closed

Test pull request by adding a line in README #1

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
1fc80f4
Test pull request by adding a line in README
matbonfanti Jan 23, 2026
a1545a3
Merge branch 'dev' into test
matbonfanti Jan 23, 2026
b94a0f6
Update comments for clarity in PSEUDOALIGN workflow
matbonfanti Jan 23, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,7 @@
## Introduction

**nfdata-omics/pseudoalign** is a bioinformatics pipeline that ...
I am adding this line to check what happens with the PR

<!-- TODO nf-core:
Complete this sentence with a 2-3 sentence summary of what types of data the pipeline ingests, a brief overview of the
Expand Down
8 changes: 4 additions & 4 deletions workflows/pseudoalign.nf
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -21,10 +21,10 @@ include { UNTAR_SALMON_INDEX } from '../modules/local/untar_salmon_index/mai
workflow PSEUDOALIGN {

take:
ch_samplesheet // channel: samplesheet read in from --input
ch_salmon_index
ch_fasta
ch_gtf
ch_samplesheet // channel: samplesheet read in from --input
ch_salmon_index // channel: salmon index folder
ch_fasta // channel: transcriptome fasta
ch_gtf // channel: gtf file

main:

Expand Down