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    21 repositories

    • clarite-python

      Public
      CLeaning to Analysis: Reproducibility-based Interface for Traits and Exposures
      bioinformaticsstatisticspandas
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•5•10•5•Updated Jan 8, 2026Jan 8, 2026

    • MyNHANES

      Public
      A reproducible data pipeline for NHANES: ingestion, curation, and transformation of health survey datasets.
      Python
      •
      MIT License
      •0•1•1•0•Updated Jun 24, 2025Jun 24, 2025

    • MyNHANES_DataHub

      Public
      Host MyNHANES Master Data and Normalizations Rules
      0•0•0•0•Updated Jun 23, 2025Jun 23, 2025

    • IGEM

      Public
      Full version of IGEM with features likes, Search Engine, ETL, Pre-Compute Mapping List, PSA, Data Lake...
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Jun 12, 2025Jun 12, 2025

    • pandas-genomics

      Public
      Pandas ExtensionDtypes for dealing with genomics data
      genomics-datapandas-extensiondtypes
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•47•9•0•Updated May 29, 2025May 29, 2025

    • PheEWAS_paper

      Public
      Files and code used for the first PheEWAS manuscript
      Python
      •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • HallLab.github.io

      Public
      Hall Lab Website
      HTML
      •
      MIT License
      •17k•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • pbs_igem

      Public
      Paper do PBS about IGEM
      Jupyter Notebook
      •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • dockstore-PharmCAP

      Public
      WDL
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

    • ldasimulations

      Public
      R
      •0•1•0•0•Updated Mar 27, 2024Mar 27, 2024

    • IGEM_Lite

      Public
      IGEM client version for genomics and exposome analysis, quantity data control, and associations using regression models. Explore associations, run analyses, and perform research. Does not include data ingestion, data lake management, or database maintenance.
      Python
      •0•1•0•0•Updated Feb 26, 2024Feb 26, 2024

    • IGEM_Support

      Public
      This repository stores GE.db Client base update files, analyzes and scripts performed with IGEM.
      Python
      •0•0•0•0•Updated Dec 4, 2023Dec 4, 2023

    • exe_interactions

      Public
      0•0•0•0•Updated Jul 27, 2023Jul 27, 2023

    • filed

      Public
      old versions of programs and projects
      Jupyter Notebook
      •0•0•0•0•Updated Dec 27, 2022Dec 27, 2022

    • ADNI_project

      Public
      Sex difference analysis on AD metabolome
      metabolomicsadnialzheimer-disease
      Python
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Apr 7, 2022Apr 7, 2022

    • PLOS_Genetics_EDGE_Paper

      Public
      Scripts and results for simulated data
      Shell
      •0•0•0•0•Updated Apr 20, 2021Apr 20, 2021

    • clarite-gui

      Public
      A GUI Version of CLARITE
      Python
      •
      GNU General Public License v3.0
      •0•0•5•0•Updated Mar 16, 2021Mar 16, 2021

    • MTBLS374_smoking_study_secondary_analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 20, 2021Jan 20, 2021

    • paper_2020_tpot_actg

      Public
      Scripts for "Automated machine learning for rare variant analysis of response to antiretroviral therapy in persons living with HIV"
      Python
      •0•1•0•0•Updated Jan 6, 2021Jan 6, 2021

    • clarite

      Public
      R
      •1•3•5•0•Updated Oct 26, 2020Oct 26, 2020

    • RNHANES

      Public
      R package for accessing and analyzing CDC NHANES data
      R
      •
      Apache License 2.0
      •13•1•0•0•Updated Apr 22, 2019Apr 22, 2019