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    6 repositories

    • CnecatorGSM

      Public
      Supplementary code and files for the manuscript "A genome-scale metabolic model of Cupriavidus necator H16 integrated with TraDIS and transcriptomic data reveal…
      HTML
      •3•3•0•0•Updated May 23, 2022May 23, 2022

    • C_auto_essentiality

      Public
      Files for "Required gene set for autotrophic growth of Clostridium autoethanogenum"
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 13, 2021Dec 13, 2021

    • Impact-of-Physicochemical-Parameters-on-thermodynamics-based-FBA

      Public
      This repository contains the Matlab files used for the calculations presented in "Physicochemical and metabolic constraints for thermodynamics-based stoichiomet…
      0•0•0•0•Updated Oct 8, 2020Oct 8, 2020

    • gsmodutils

      Public
      A utility framework for the management of genome-scale metabolic models.
      TeX
      •
      Apache License 2.0
      •2•11•8•1•Updated Mar 28, 2020Mar 28, 2020

    • clau_supp

      Public
      Supplementary Repository for gsmodutils
      Jupyter Notebook
      •0•0•0•0•Updated Oct 27, 2019Oct 27, 2019

    • cluster_query_tool

      Public
      Cluster query tool
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•6•0•0•Updated Jun 28, 2018Jun 28, 2018