Sentieon

All

18 repositories

segdup-caller
Public
Specialized handling for difficult genes
Python
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BSD 2-Clause "Simplified" License
•1•5•1•0•Updated Feb 11, 2026Feb 11, 2026
sentieon-models
Public
Model files for Sentieon variant callers
4•16•0•0•Updated Feb 9, 2026Feb 9, 2026
sentieon-cli
Public
A command-line interface for Sentieon pipelines
Python
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BSD 2-Clause "Simplified" License
•4•14•0•0•Updated Feb 9, 2026Feb 9, 2026
sentieon-scripts
Public
Helper scripts for biological data processing from Sentieon
Shell
•
BSD 2-Clause "Simplified" License
•23•64•2•0•Updated Jan 27, 2026Jan 27, 2026
terraform
Public
Terraform configuration files for the Sentieon software
HCL
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BSD 2-Clause "Simplified" License
•2•1•0•0•Updated Jan 16, 2026Jan 16, 2026
sentieon-docker
Public
Example Dockerfiles for use with the Sentieon software
dockerfiles sentieon sentieon-docker
Dockerfile
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BSD 2-Clause "Simplified" License
•7•9•0•0•Updated Jan 16, 2026Jan 16, 2026
KMC
Public
Fast and frugal disk based k-mer counter
C++
•82•0•0•0•Updated Jan 5, 2026Jan 5, 2026
hap-eval
Public
A VCF comparison engine for structual variant benchmarking
Python
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BSD 2-Clause "Simplified" License
•3•23•4•1•Updated Sep 26, 2025Sep 26, 2025
sentieon-google-genomics
Public archive
Run Sentieon pipelines on Google Cloud Platform
somatic-variants gcp bioinformatics-pipeline cloud-computing speedup genomic-data-analysis ngs-pipeline germline-variants sentieon
Shell
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BSD 2-Clause "Simplified" License
•7•7•0•0•Updated Aug 4, 2025Aug 4, 2025
vcflib
Public
An open-source Python library for parsing and manipulation of VCF
Python
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BSD 2-Clause "Simplified" License
•2•9•0•0•Updated May 17, 2025May 17, 2025
sentieon-amazon-omics
Public
Sentieon pipelines for AWS HealthOmics
WDL
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BSD 2-Clause "Simplified" License
•4•8•0•0•Updated Apr 5, 2025Apr 5, 2025
sentieon-dnascope-ml
Public
Sentieon DNAscope + Machine Learning Model
machine-learning next-generation-sequencing dna bioinformatics-pipeline variant-calling germline-variants sentieon genomics-data dnascope
Shell
•4•12•1•0•Updated Mar 19, 2025Mar 19, 2025
aws-benchmark-scripts
Public
Scripts used in benchmarking Sentieon DNAseq and DNAscope pipelines on AWS EC2
Python
•3•5•0•0•Updated Jan 25, 2024Jan 25, 2024
Sentieon-WDL
Public
WDL pipelines for the Sentieon tools
wdl-workflow sentieon ccdg functional-equivalent-pipeline fastq2vcf
WDL
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BSD 2-Clause "Simplified" License
•3•9•0•0•Updated Dec 29, 2022Dec 29, 2022
sentieon-matching-performance
Public
Accuracy and runtime benchmarks for the Sentieon GATK-matching tools
Shell
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BSD 2-Clause "Simplified" License
•3•6•0•0•Updated Mar 19, 2021Mar 19, 2021
sentieon-dnaseq
Public archive
Sentieon DNAseq
acceleration gatk bioinformatics-pipeline variant-calling dnaseq bwa-mem dna-sequencing sentieon gatk4 genomics-data
Shell
•13•23•0•0•Updated Dec 30, 2020Dec 30, 2020
Sentieon-cwl
Public
CWL pipelines for the Sentieon tools
distributed-computing ngs-pipeline sentieon cwl-standards toil-supports
Common Workflow Language
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BSD 2-Clause "Simplified" License
•2•4•0•0•Updated Oct 22, 2018Oct 22, 2018
toil
Public
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
Python
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Apache License 2.0
•245•0•0•0•Updated Jun 12, 2018Jun 12, 2018