Skip to content

@WGLab Wang Genomics Lab

Change the repository type filter

All

    Repositories list

    95 repositories

    • SCOTCH

      Public
      Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing
      Python
      •
      MIT License
      •2•17•2•0•Updated Dec 27, 2025Dec 27, 2025

    • PDIDB-webapp

      Public
      Webpage for Phenotype Disease Image Database
      HTML
      •0•0•0•0•Updated Dec 16, 2025Dec 16, 2025

    • MARDD

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Dec 9, 2025Dec 9, 2025

    • Multimodal-Variant-Effect-Model

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 5, 2025Dec 5, 2025

    • PDIDB

      Public
      Phenotype Diseased Image Synthesis Database
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 3, 2025Dec 3, 2025

    • PhenCards

      Public
      Development of phencards.org web server for one stop shop of phenotype information
      HTML
      •1•4•11•1•Updated Dec 2, 2025Dec 2, 2025

    • PhenoSS

      Public
      MIT License
      •0•1•0•0•Updated Nov 22, 2025Nov 22, 2025

    • PhenoGPT2

      Public
      PhenoGPT2 is an advanced phenotype recognition model, leveraging the robust capabilities of large language models.
      Python
      •
      MIT License
      •1•5•5•0•Updated Nov 7, 2025Nov 7, 2025

    • PubMind

      Public
      PubMind is a large language model (LLM)-assisted framework for Publication Mutation and information Discovery, designed to extract variant–disease–pathogenicity relationships directly from biomedical literature.
      Jupyter Notebook
      •
      Other
      •1•3•0•0•Updated Nov 2, 2025Nov 2, 2025

    • PipeVar

      Public
      Pipeline to call phenotype variant
      Nextflow
      •0•0•0•0•Updated Oct 13, 2025Oct 13, 2025

    • ContextSV

      Public
      An alignment-based, generalized structural variant caller for long-read sequencing/mapping data
      C++
      •
      MIT License
      •0•2•5•0•Updated Sep 20, 2025Sep 20, 2025

    • LongReadSum

      Public
      C++
      •
      MIT License
      •3•28•5•0•Updated Sep 11, 2025Sep 11, 2025

    • NanoRepeat

      Public
      NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
      bioinformaticsgenomicssequencinggenome-analysisnanopore-sequencingshort-tandem-repeatspacbio-sequencingrepeat-detection
      Python
      •
      MIT License
      •3•20•6•0•Updated Sep 10, 2025Sep 10, 2025

    • RareDAI

      Public
      RareDAI is an advanced LLM technique, fine-tuned on LLama 3.1 models, designed to support genetic counselors and patients in choosing the most appropriate molecular genetic tests, such as gene panels or WES/WGS, through clear and comprehensive explanations.
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 27, 2025Aug 27, 2025

    • RankVar

      Public
      Python
      •0•3•0•0•Updated Aug 26, 2025Aug 26, 2025

    • MultiSHAP

      Public
      Python
      •0•4•0•0•Updated Aug 1, 2025Aug 1, 2025

    • doc-ANNOVAR

      Public
      Documentation for the ANNOVAR software
      421•246•135•0•Updated Jul 30, 2025Jul 30, 2025

    • QuantitativeGenomics2025

      Public
      Materials for Quantitative Genomics 2025 workshop
      MIT License
      •3•3•0•0•Updated Jul 7, 2025Jul 7, 2025

    • mutformer

      Public
      A transformer model to predict pathogenic mutations
      Jupyter Notebook
      •
      Apache License 2.0
      •2•12•1•0•Updated Jun 25, 2025Jun 25, 2025

    • Gene-Fusion-Detection-Pipeline-LRS

      Public
      The Gene Fusion (GF) Detection Pipeline is comprehensive bioinformatics workflow designed for Oxford Nanopore long-read sequencing data.
      Jupyter Notebook
      •0•2•0•0•Updated Jun 11, 2025Jun 11, 2025

    • SPARK_de_novo_analysis_pipeline

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 28, 2025May 28, 2025

    • MINT-LLM

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated May 19, 2025May 19, 2025

    • LIQA2

      Public
      Python
      •0•0•2•0•Updated Apr 8, 2025Apr 8, 2025

    • LIQA

      Public
      Long-read Isoform Quantification and Analysis
      Python
      •
      Other
      •13•38•0•0•Updated Mar 25, 2025Mar 25, 2025

    • CoT-RAG-LLM-Gene-Prioritization-Disease-Diagnosis

      Public
      MIT License
      •0•3•0•0•Updated Mar 23, 2025Mar 23, 2025

    • NanoCaller

      Public
      Variant calling tool for long-read sequencing data
      Python
      •
      MIT License
      •8•116•33•0•Updated Mar 19, 2025Mar 19, 2025

    • PhenoGPT

      Public
      Jupyter Notebook
      •
      MIT License
      •8•29•4•0•Updated Mar 15, 2025Mar 15, 2025

    • InFuse

      Public
      Software for detecting gene fusions and exon-skippings from long read sequencing
      Python
      •0•0•0•0•Updated Mar 12, 2025Mar 12, 2025

    • DeepMod2

      Public
      DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
      deep-learningmethylationnanopore-sequencing
      Jupyter Notebook
      •
      MIT License
      •5•59•15•0•Updated Mar 5, 2025Mar 5, 2025

    • CancerVar

      Public
      Clinical interpretation of somatic mutations in cancer
      Python
      •15•50•21•0•Updated Feb 20, 2025Feb 20, 2025