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    17 repositories

    • redun

      Public
      Yet another redundant workflow engine
      pythondockerawsdata-sciencebioinformaticsetlworkflow-enginegcpmldata-engineering
      Python
      •
      Apache License 2.0
      •54•573•28•5•Updated Dec 10, 2025Dec 10, 2025

    • insitro-research

      Public
      insitro's repository for public research code and data
      Jupyter Notebook
      •11•24•0•0•Updated Dec 1, 2025Dec 1, 2025

    • ChannelSFormer

      Public
      Code Repository for ChannelSFormer: A Channel Agnostic Vision Transformer for Multi-Channel Cell Painting Images
      Python
      •0•1•0•0•Updated Dec 1, 2025Dec 1, 2025

    • cp-posh

      Public
      A Pooled Cell Painting CRISPR Screening Platform Enables de novo Inference of Gene Function by Self-supervised Deep Learning
      Jupyter Notebook
      •
      Other
      •1•5•1•0•Updated Oct 29, 2025Oct 29, 2025

    • AllelicSeries

      Public
      Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutations have increasingly large phenotypic effects.
      R
      •
      Other
      •2•14•0•0•Updated Oct 22, 2025Oct 22, 2025

    • MoleculeMiner

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Sep 23, 2025Sep 23, 2025

    • kindel

      Public
      KinDEL is a large DNA-encoded library dataset containing two kinase targets (DDR1 and MAPK14) for benchmarking machine learning models.
      machine-learningdatasetkinasedna-encoded-library
      Python
      •
      Other
      •11•28•1•0•Updated Sep 2, 2025Sep 2, 2025

    • contrastive_vi_plus

      Public
      Modeling variable guide efficiency in pooled CRISPR screens with ContrastiveVI+
      Python
      •1•8•0•0•Updated May 5, 2025May 5, 2025

    • causal_considerations_ml_assisted_gwas

      Public
      simulation code for the paper 'Causal considerations can deterimine the utility of machine learning assisted GWAS'
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Apr 3, 2025Apr 3, 2025

    • FastVim

      Public
      Fast Vision Mamba : Pool your Spatial Dimensions for Accelerated Processing
      Python
      •
      Other
      •1•15•1•6•Updated Jan 28, 2025Jan 28, 2025

    • PertSpectra

      Public
      PertSpectra: Interpretable Matrix Factorization for Predicting Functional Impact of Genetic Perturbation Experiments
      Jupyter Notebook
      •0•1•0•0•Updated Jan 23, 2025Jan 23, 2025

    • fALS_pub2025

      Public
      Deep Learning Analysis on Images of iPSC-derived Motor Neurons Carrying fALS-genetics Reveals Disease-Relevant Phenotypes
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

    • EmbedGEM

      Public
      EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery
      Python
      •
      Apache License 2.0
      •1•22•0•0•Updated Oct 3, 2024Oct 3, 2024

    • ChannelViT

      Public
      Channel Vision Transformers: An Image Is Worth C x 16 x 16 Words
      machine-learningcomputer-visionvision-transformer
      Python
      •
      Other
      •8•71•8•0•Updated Feb 22, 2024Feb 22, 2024

    • sams-vae

      Public
      Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" by Bereket & Karaletsos published in Neurips 2023
      Jupyter Notebook
      •3•13•0•0•Updated Oct 20, 2023Oct 20, 2023

    • ContextViT

      Public
      Contextual Vision Transformers for Robust Representation Learning
      machine-learningcomputer-visionartificial-intelligencevision-transformericml-2023
      Python
      •
      Other
      •2•15•0•0•Updated Oct 19, 2023Oct 19, 2023

    • opentelemetry-collector-contrib

      Public
      Contrib repository for the OpenTelemetry Collector
      Go
      •
      Apache License 2.0
      •3.2k•0•0•0•Updated Nov 30, 2022Nov 30, 2022