Repositories list

• MINERVA

  Public
  A unified deep learning framework that leverages self-supervised strategies for single-cell multimodal data

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Dec 15, 2025Dec 15, 2025

• midas

  Public
  PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).

  deep-learningdeep-generative-modelsingle-cell-multiomics+ 1single-cell-data-integration

  Python

  •

  MIT License

  •8•62•1•0•Updated Dec 3, 2025Dec 3, 2025

• DBP

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

• scDAC

  Public
  Jupyter Notebook

  •0•4•0•0•Updated Apr 7, 2024Apr 7, 2024

• MetaLogo

  Public
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner

  pythondockerweb-server+ 8alignmentmotifsweblogosequence-logocreate-sequence-logologo-groupphylogenetic-sequence-logo+ 1

  Python

  •

  Apache License 2.0

  •1•21•1•0•Updated Apr 10, 2023Apr 10, 2023

• labomics.github.io

  Public
  0•0•0•0•Updated Mar 19, 2022Mar 19, 2022

• strain_profiling

  Public
  Profile the strains in the human gut

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Feb 22, 2022Feb 22, 2022

• SNPsnp

  Public
  Python

  •2•1•1•0•Updated Feb 17, 2022Feb 17, 2022

• metagenomic_SNP_calling

  Public
  Python

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Aug 16, 2021Aug 16, 2021