Repositories list

• scSLIDE

  Public

  satijalab/scSLIDE’s past year of commit activity
  R

  •

  Other

  •0•2•1•0•Updated Jan 29, 2026Jan 29, 2026

• seurat-object

  Public

  satijalab/seurat-object’s past year of commit activity
  R

  •

  Other

  •34•33•46•7•Updated Jan 27, 2026Jan 27, 2026

• seurat-docker

  Public
  Docker images of Seurat

  dockersingle-cellsingle-cell-genomics+ 2single-cell-analysishuman-cell-atlas

  Dockerfile

  •9•9•0•0•Updated Jan 22, 2026Jan 22, 2026

• seurat

  Public
  R toolkit for single cell genomics

  cransingle-cell-genomicssingle-cell-rna-seq+ 1human-cell-atlas

  R

  •

  Other

  •979•2.6k•276•34•Updated Jan 21, 2026Jan 21, 2026

• sctransform

  Public
  R package for modeling single cell UMI expression data using regularized negative binomial regression

  R

  •

  GNU General Public License v3.0

  •35•247•49•0•Updated Jan 10, 2026Jan 10, 2026

• seurat-wrappers

  Public
  Community-provided extensions to Seurat

  communitysingle-cell-genomicssingle-cell-analysis

  R

  •

  GNU General Public License v3.0

  •143•355•91•18•Updated Jan 8, 2026Jan 8, 2026

• Mixscale

  Public
  R

  •2•23•15•0•Updated Oct 10, 2025Oct 10, 2025

• panhumanpy

  Public
  Python

  •0•23•4•3•Updated Oct 1, 2025Oct 1, 2025

• rna-fingerprinting

  Public

  satijalab/rna-fingerprinting’s past year of commit activity
  R

  •

  Other

  •0•7•0•0•Updated Sep 21, 2025Sep 21, 2025

• rna-fingerprinting-data

  Public
  R

  •0•0•0•0•Updated Sep 16, 2025Sep 16, 2025

• AzimuthAPI

  Public
  R

  •

  MIT License

  •1•3•5•0•Updated Jul 29, 2025Jul 29, 2025

• azimuth-references

  Public

  satijalab/azimuth-references’s past year of commit activity
  R

  •10•26•11•1•Updated May 16, 2025May 16, 2025

• seurat-data

  Public
  Dataset distribution for Seurat

  datasetssingle-cellsingle-cell-genomics

  R

  •

  GNU General Public License v3.0

  •45•151•38•1•Updated Mar 6, 2025Mar 6, 2025

• satijalab.r-universe.dev

  Public
  0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• azimuth_website

  Public
  HTML

  •0•1•0•1•Updated Nov 6, 2024Nov 6, 2024

• azimuth

  Public
  A Shiny web app for mapping datasets using Seurat v4

  single-cell-genomicssingle-cell-rna-seqshiny-app

  HTML

  •

  GNU General Public License v3.0

  •43•144•100•6•Updated Nov 5, 2024Nov 5, 2024

• PASTA

  Public
  R

  •

  Other

  •8•21•8•1•Updated Aug 26, 2024Aug 26, 2024

• scChromHMM

  Public
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.

  single-cellhistone-modificationschromatin-state

  Rust

  •

  BSD 3-Clause "New" or "Revised" License

  •4•29•3•0•Updated Sep 9, 2021Sep 9, 2021

• azimuth-meta-analysis

  Public
  R

  •0•2•0•0•Updated Jun 14, 2021Jun 14, 2021

• AzimuthDashboard

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 16, 2021Feb 16, 2021

• lung-ccf

  Public
  Central repo to deposit code for lung CCF project

  Jupyter Notebook

  •0•2•0•0•Updated Feb 12, 2020Feb 12, 2020

• controls

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Nov 20, 2019Nov 20, 2019

• data

  Public
  1•0•0•0•Updated Nov 20, 2019Nov 20, 2019

• Integration2019

  Public
  R

  •8•17•3•0•Updated Jun 5, 2019Jun 5, 2019

• gdown.pl

  Public
  Google Drive direct download of big files

  Perl

  •

  GNU General Public License v3.0

  •187•0•0•0•Updated Feb 3, 2019Feb 3, 2019

• hca-jamboree-how-many-cells

  Public
  MIT License

  •7•0•0•0•Updated Apr 10, 2018Apr 10, 2018