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rudrajoshi2481/README.md

👋 Rudhra Joshi

LinkedIn Badge Website Badge

Bioinformatician • Software Developer • Pharmacy Graduate • Deep Learning Engineer

🚀 Building foundation models: ESM-2, AlphaFold2, DNABERT

  • MS in Bioinformatics at Rowan University
  • Pharmacy Graduate with hands-on experience in drug discovery and medicinal chemistry (anticancer drug)
  • Foundation models: ESM-2, AlphaFold2, DNABERT
  • Bioinformatics: RNA-seq, ChIP-seq, Hi-C, ChIA-PET, HiChIP
  • Software Developer: Next.js, Python, Docker, AWS

Tech Stack

  • Languages: Python, TypeScript (Next.js)
  • Tools & Frameworks: Docker, AWS, GCP, Redis, MongoDB, Git, Blender
  • Bioinformatics Tools: Cooler, Pairtools, BWA-MEM, MACS3, HiGlass, DESeq2, GATK & many more

🧩 Current Focus

  • Learning how to build advanced foundation models in genomics
  • Working on genomics pipeline development

📫 Let’s Connect

Pinned Loading

  1. rudrajoshi.me rudrajoshi.me Public

    profile website

    TypeScript

  2. The-Bioinformatics-Arsenal The-Bioinformatics-Arsenal Public

    Reimplementing 20+ SOTA bio-models because reading the paper wasn't painful enough.

    Jupyter Notebook

  3. DockingLabs DockingLabs Public

    currently workink

    TypeScript

  4. PointMAE-Rutgurs PointMAE-Rutgurs Public

    Custom Implementation of PointMAE Specific for Radio Language Model

    Python 1