I’m a product-minded computational biologist. I like building tools that make omics data easier to explore, trust, and share. My work is R/Shiny + Agentic Systems + genomics (WES, bulk RNA-seq, sn/scRNA-seq) with modular design and reproducible workflows.
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Instructor at Carepntry Workshop on "R and Git" at UAB. https://u-bds.github.io/2026-01-29-uab/
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Instructor at Carpentry Workshop on "Bash Shell, Git, Text Editor, and Python" at UAB. https://u-bds.github.io/2024-03-18-uab/
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Instructor at Carpentry Workshop on "Bash Shell, Git, Text Editor, and R" at UAB. https://u-bds.github.io/2023-12-14-uab/
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Helper at Carpentry Style Workshop on "Bulk RNA-Seq" at UAB. https://u-bds.github.io/2024-07-09-uab/
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Flash Talk on R Shiny Bioinformatics app on AWS EC2. https://mentorchains.github.io/STEM-AWAY_AWS_BI_2021/
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Additional Resource: R For Beginners (WEB + Quarto Slides) https://github.com/samuelbharti/r-for-beginners
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MOLV (Multi-Omics Locus Viewer) — locus-first multi-omics viewer (Shiny app + R package) for Human Genetics teams at Genentech (private)
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scRNA-seq Analysis Integration App (in dev) — nf-core outputs + Seurat + pseudobulk + CellChat in one place (unreleased)
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Pediatric Thyroid Cancer Explorer — interactive WES/bulk RNA exploration (unreleased)
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SEAS — clinical feature enrichment + prediction
App: https://aimed-lab.shinyapps.io/SEAS/
Docs: https://aimed-lab.github.io/SEAS/ -
R Shiny Template — reusable template for bioinformatics web apps
Repo: https://github.com/samuelbharti/RShiny_template -
Peacock — R package for project initialization/workflow management
Repo: https://github.com/samuelbharti/peacock -
LLM in R-Shiny — drop-in chatbot module for Shiny apps
Repo: https://github.com/samuelbharti/RShiny_LLM_Module -
PAGER / PAGER Web App — pathway + gene-set enrichment tooling + network views
Site: http://discovery.informatics.uab.edu/PAGER/
Repo: https://github.com/aimed-lab/PAGER-Web-APP -
sMAP — transcriptomics QC + stats + biomarker discovery (built for non-coders)
Docs: https://bi-stem-away.github.io/sMAP/
Demo PDF: https://mentorchains.github.io/STEM-AWAY_AWS_BI_2021/sMAP_demo.pdf
Repo: https://github.com/BI-STEM-Away/sMAP -
BioDivPortal (Poland) — biodiversity exploration app
Repo: https://github.com/samuelbharti/BioDivPortalPoland
App: https://samuelbharti.shinyapps.io/BioDivPortal/ -
PepEngine — structural database for synthetic peptides
https://pepengine.in/ -
GlucoKinaseDB — curated database of glucokinase modulators
https://glucokinasedb.in/
Dataset/API: https://glucokinasedb.in/dataset -
VIRdb 2.0 — vitiligo resource