[ruby] Upgrade Rails to 7.1

Gemfile

@@ -17,7 +17,7 @@ gem 'mutex_m'
 gem 'oj', '~> 3.13'
 gem 'pmb-client', '0.1.0', github: 'sanger/pmb-client'
 gem 'puma'
-gem 'rails', '~> 7.0.8', '>= 7.0.8.7'
+gem 'rails', '~> 7.1.0'
 gem 'roo', '~> 2.8.0'
 gem 'sanger_barcode_format', github: 'sanger/sanger_barcode_format', branch: 'development'
 gem 'sassc-rails'

Gemfile.lock

@@ -15,72 +15,78 @@ GIT
 GEM
   remote: https://rubygems.org/
   specs:
-    actioncable (7.0.10)
-      actionpack (= 7.0.10)
-      activesupport (= 7.0.10)
+    actioncable (7.1.6)
+      actionpack (= 7.1.6)
+      activesupport (= 7.1.6)
       nio4r (~> 2.0)
       websocket-driver (>= 0.6.1)
-    actionmailbox (7.0.10)
-      actionpack (= 7.0.10)
-      activejob (= 7.0.10)
-      activerecord (= 7.0.10)
-      activestorage (= 7.0.10)
-      activesupport (= 7.0.10)
+      zeitwerk (~> 2.6)
+    actionmailbox (7.1.6)
+      actionpack (= 7.1.6)
+      activejob (= 7.1.6)
+      activerecord (= 7.1.6)
+      activestorage (= 7.1.6)
+      activesupport (= 7.1.6)
       mail (>= 2.7.1)
       net-imap
       net-pop
       net-smtp
-    actionmailer (7.0.10)
-      actionpack (= 7.0.10)
-      actionview (= 7.0.10)
-      activejob (= 7.0.10)
-      activesupport (= 7.0.10)
+    actionmailer (7.1.6)
+      actionpack (= 7.1.6)
+      actionview (= 7.1.6)
+      activejob (= 7.1.6)
+      activesupport (= 7.1.6)
       mail (~> 2.5, >= 2.5.4)
       net-imap
       net-pop
       net-smtp
-      rails-dom-testing (~> 2.0)
-    actionpack (7.0.10)
-      actionview (= 7.0.10)
-      activesupport (= 7.0.10)
+      rails-dom-testing (~> 2.2)
+    actionpack (7.1.6)
+      actionview (= 7.1.6)
+      activesupport (= 7.1.6)
+      cgi
+      nokogiri (>= 1.8.5)
       racc
-      rack (~> 2.0, >= 2.2.4)
+      rack (>= 2.2.4)
+      rack-session (>= 1.0.1)
       rack-test (>= 0.6.3)
-      rails-dom-testing (~> 2.0)
-      rails-html-sanitizer (~> 1.0, >= 1.2.0)
-    actiontext (7.0.10)
-      actionpack (= 7.0.10)
-      activerecord (= 7.0.10)
-      activestorage (= 7.0.10)
-      activesupport (= 7.0.10)
+      rails-dom-testing (~> 2.2)
+      rails-html-sanitizer (~> 1.6)
+    actiontext (7.1.6)
+      actionpack (= 7.1.6)
+      activerecord (= 7.1.6)
+      activestorage (= 7.1.6)
+      activesupport (= 7.1.6)
       globalid (>= 0.6.0)
       nokogiri (>= 1.8.5)
-    actionview (7.0.10)
-      activesupport (= 7.0.10)
+    actionview (7.1.6)
+      activesupport (= 7.1.6)
       builder (~> 3.1)
-      erubi (~> 1.4)
-      rails-dom-testing (~> 2.0)
-      rails-html-sanitizer (~> 1.1, >= 1.2.0)
-    activejob (7.0.10)
-      activesupport (= 7.0.10)
+      cgi
+      erubi (~> 1.11)
+      rails-dom-testing (~> 2.2)
+      rails-html-sanitizer (~> 1.6)
+    activejob (7.1.6)
+      activesupport (= 7.1.6)
       globalid (>= 0.3.6)
-    activemodel (7.0.10)
-      activesupport (= 7.0.10)
-    activerecord (7.0.10)
-      activemodel (= 7.0.10)
-      activesupport (= 7.0.10)
-    activestorage (7.0.10)
-      actionpack (= 7.0.10)
-      activejob (= 7.0.10)
-      activerecord (= 7.0.10)
-      activesupport (= 7.0.10)
+    activemodel (7.1.6)
+      activesupport (= 7.1.6)
+    activerecord (7.1.6)
+      activemodel (= 7.1.6)
+      activesupport (= 7.1.6)
+      timeout (>= 0.4.0)
+    activestorage (7.1.6)
+      actionpack (= 7.1.6)
+      activejob (= 7.1.6)
+      activerecord (= 7.1.6)
+      activesupport (= 7.1.6)
       marcel (~> 1.0)
-      mini_mime (>= 1.1.0)
-    activesupport (7.0.10)
+    activesupport (7.1.6)
       base64
       benchmark (>= 0.3)
       bigdecimal
       concurrent-ruby (~> 1.0, >= 1.0.2)
+      connection_pool (>= 2.2.5)
       drb
       i18n (>= 1.6, < 2)
       logger (>= 1.4.2)
@@ -116,15 +122,18 @@ GEM
     capybara-selenium (0.0.6)
       capybara
       selenium-webdriver
+    cgi (0.5.1)
     childprocess (5.1.0)
       logger (~> 1.5)
     coderay (1.1.3)
     concurrent-ruby (1.3.4)
+    connection_pool (3.0.2)
     crass (1.0.6)
     csv (3.3.5)
     date (3.5.0)
     docile (1.4.0)
     drb (2.2.3)
+    erb (6.0.1)
     erubi (1.13.1)
     exception_notification (4.6.0)
       actionmailer (>= 5.2, < 9)
@@ -164,6 +173,12 @@ GEM
       logger
     i18n (1.14.8)
       concurrent-ruby (~> 1.0)
+    io-console (0.8.2)
+    irb (1.17.0)
+      pp (>= 0.6.0)
+      prism (>= 1.3.0)
+      rdoc (>= 4.0.0)
+      reline (>= 0.4.2)
     jquery-rails (4.6.1)
       rails-dom-testing (>= 1, < 3)
       railties (>= 4.2.0)
@@ -201,9 +216,9 @@ GEM
     method_source (1.1.0)
     mini_mime (1.1.5)
     minitest (5.27.0)
-    minitest-rails (7.0.1)
-      minitest (~> 5.10)
-      railties (~> 7.0.0)
+    minitest-rails (7.1.1)
+      minitest (~> 5.20)
+      railties (>= 7.1.0, < 8.0.0)
     minitest-rails-capybara (0.0.2)
       capybara
       minitest-rails
@@ -237,33 +252,44 @@ GEM
     parser (3.3.10.1)
       ast (~> 2.4.1)
       racc
+    pp (0.6.3)
+      prettyprint
+    prettyprint (0.2.0)
     prism (1.9.0)
     pry (0.14.2)
       coderay (~> 1.1)
       method_source (~> 1.0)
     pry-rails (0.3.11)
       pry (>= 0.13.0)
+    psych (5.3.1)
+      date
+      stringio
     public_suffix (6.0.1)
     puma (7.2.0)
       nio4r (~> 2.0)
     racc (1.8.1)
     rack (2.2.21)
+    rack-session (1.0.2)
+      rack (< 3)
     rack-test (2.2.0)
       rack (>= 1.3)
-    rails (7.0.10)
-      actioncable (= 7.0.10)
-      actionmailbox (= 7.0.10)
-      actionmailer (= 7.0.10)
-      actionpack (= 7.0.10)
-      actiontext (= 7.0.10)
-      actionview (= 7.0.10)
-      activejob (= 7.0.10)
-      activemodel (= 7.0.10)
-      activerecord (= 7.0.10)
-      activestorage (= 7.0.10)
-      activesupport (= 7.0.10)
+    rackup (1.0.1)
+      rack (< 3)
+      webrick
+    rails (7.1.6)
+      actioncable (= 7.1.6)
+      actionmailbox (= 7.1.6)
+      actionmailer (= 7.1.6)
+      actionpack (= 7.1.6)
+      actiontext (= 7.1.6)
+      actionview (= 7.1.6)
+      activejob (= 7.1.6)
+      activemodel (= 7.1.6)
+      activerecord (= 7.1.6)
+      activestorage (= 7.1.6)
+      activesupport (= 7.1.6)
       bundler (>= 1.15.0)
-      railties (= 7.0.10)
+      railties (= 7.1.6)
     rails-controller-testing (1.0.5)
       actionpack (>= 5.0.1.rc1)
       actionview (>= 5.0.1.rc1)
@@ -275,19 +301,28 @@ GEM
     rails-html-sanitizer (1.6.2)
       loofah (~> 2.21)
       nokogiri (>= 1.15.7, != 1.16.7, != 1.16.6, != 1.16.5, != 1.16.4, != 1.16.3, != 1.16.2, != 1.16.1, != 1.16.0.rc1, != 1.16.0)
-    railties (7.0.10)
-      actionpack (= 7.0.10)
-      activesupport (= 7.0.10)
-      method_source
+    railties (7.1.6)
+      actionpack (= 7.1.6)
+      activesupport (= 7.1.6)
+      cgi
+      irb
+      rackup (>= 1.0.0)
       rake (>= 12.2)
-      thor (~> 1.0)
-      zeitwerk (~> 2.5)
+      thor (~> 1.0, >= 1.2.2)
+      tsort (>= 0.2)
+      zeitwerk (~> 2.6)
     rainbow (3.1.1)
     rake (13.3.1)
     rb-fsevent (0.11.2)
     rb-inotify (0.11.1)
       ffi (~> 1.0)
+    rdoc (7.2.0)
+      erb
+      psych (>= 4.0.0)
+      tsort
     regexp_parser (2.11.3)
+    reline (0.6.3)
+      io-console (~> 0.5)
     rexml (3.4.4)
     roo (2.8.3)
       nokogiri (~> 1)
@@ -350,19 +385,22 @@ GEM
       actionpack (>= 6.1)
       activesupport (>= 6.1)
       sprockets (>= 3.0.0)
+    stringio (3.2.0)
     syslog (0.4.0)
       logger
     thor (1.4.0)
     tilt (2.1.0)
     timecop (0.9.10)
     timeout (0.4.4)
+    tsort (0.2.0)
     tzinfo (2.0.6)
       concurrent-ruby (~> 1.0)
     uglifier (4.2.1)
       execjs (>= 0.3.0, < 3)
     unicode-display_width (3.2.0)
       unicode-emoji (~> 4.1)
     unicode-emoji (4.2.0)
+    webrick (1.9.2)
     websocket (1.2.11)
     websocket-driver (0.8.0)
       base64
@@ -405,7 +443,7 @@ DEPENDENCIES
   pmb-client (= 0.1.0)!
   pry-rails
   puma
-  rails (~> 7.0.8, >= 7.0.8.7)
+  rails (~> 7.1.0)
   rails-controller-testing
   roo (~> 2.8.0)
   rubocop

bin/setup

@@ -1,28 +1,25 @@
 #!/usr/bin/env ruby
-require 'fileutils'
-include FileUtils
+require "fileutils"
 
 # path to your application root.
-APP_ROOT = File.expand_path('..', __dir__)
+APP_ROOT = File.expand_path("..", __dir__)
 
 def system!(*args)
-  system(*args) || abort("\n== Command #{args} failed ==")
+  system(*args, exception: true)
 end
 
-chdir APP_ROOT do
-  # This script is a starting point to setup your application.
+FileUtils.chdir APP_ROOT do
+  # This script is a way to set up or update your development environment automatically.
+  # This script is idempotent, so that you can run it at any time and get an expectable outcome.
   # Add necessary setup steps to this file.
 
-  puts '== Installing dependencies =='
-  system! 'gem install bundler --conservative'
-  system('bundle check') || system!('bundle install')
-
-  # Install JavaScript dependencies if using Yarn
-  # system('bin/yarn')
+  puts "== Installing dependencies =="
+  system! "gem install bundler --conservative"
+  system("bundle check") || system!("bundle install")
 
   puts "\n== Removing old logs and tempfiles =="
-  system! 'bin/rails log:clear tmp:clear'
+  system! "bin/rails log:clear tmp:clear"
 
   puts "\n== Restarting application server =="
-  system! 'bin/rails restart'
+  system! "bin/rails restart"
 end

config/application.rb

@@ -3,9 +3,13 @@
 require_relative 'boot'
 
 # We don't want ActiveRecord
+require 'rails'
+# Pick the frameworks you want:
+require 'active_model/railtie'
+require 'active_job/railtie'
 require 'action_controller/railtie'
 require 'action_mailer/railtie'
-require 'sprockets/railtie'
+require 'action_view/railtie'
 require 'rails/test_unit/railtie'
 require './lib/gatekeeper/version'
 
@@ -27,6 +31,26 @@ class Application < Rails::Application
     # Run "rake -D time" for a list of tasks for finding time zone names. Default is UTC.
     # config.time_zone = 'Central Time (US & Canada)'
 
+    # No longer add autoloaded paths into `$LOAD_PATH`. This means that you won't be able
+    # to manually require files that are managed by the autoloader, which you shouldn't do anyway.
+    #
+    # This will reduce the size of the load path, making `require` faster if you don't use bootsnap, or reduce the size
+    # of the bootsnap cache if you use it.
+    config.add_autoload_paths_to_load_path = false
+
+    # Please, add to the `ignore` list any other `lib` subdirectories that do
+    # not contain `.rb` files, or that should not be reloaded or eager loaded.
+    # Common ones are `templates`, `generators`, or `middleware`, for example.
+    config.autoload_lib(ignore: %w[assets tasks])
+
+    # Configuration for the application, engines, and railties goes here.
+    #
+    # These settings can be overridden in specific environments using the files
+    # in config/environments, which are processed later.
+    #
+    # config.time_zone = "Central Time (US & Canada)"
+    # config.eager_load_paths << Rails.root.join("extras")
+
     # The default locale is :en and all translations from config/locales/*.rb,yml are auto loaded.
     # config.i18n.load_path += Dir[Rails.root.join('my', 'locales', '*.{rb,yml}').to_s]
     config.i18n.enforce_available_locales = false