Search results

normalise multiallelic deletions in merged VCFs

Status: Open.

#23 In schneebergerlab/msyd;

· mparker2 opened on Jan 22, 2026

[Enhancement] Ensure deletion of tempfiles

Status: Open.

#22 In schneebergerlab/msyd;

· lrauschning opened on Nov 13, 2025

msyd keeps SNPS/Indels from trans/dup alignments overlapping syntenic alignments

Status: Open.

#18 In schneebergerlab/msyd;

· mparker2 opened on Jul 8, 2025

No BAM/SAM or PAF files

Status: Open.

#16 In schneebergerlab/msyd;

· annerilotter opened on Feb 17, 2025

HDR regions not included in coresyn calls, but still present in filtered VCF

Status: Open.

#15 In schneebergerlab/msyd;

· mparker2 opened on Sep 10, 2024

very few coresynteny region

Status: Open.

#14 In schneebergerlab/msyd;

· baozg opened on Jul 8, 2024

FEATURE: Add ability to import realignments from files

enhancementNew feature or requestNew feature or request

Status: Open.

#13 In schneebergerlab/msyd;

· lrauschning opened on May 21, 2024

Issues while anaysing highly similar genomes

Status: Open.

#6 In schneebergerlab/msyd;

· mnshgl0110 opened on Nov 9, 2022

Feature Request: Consistent access to genome ranges

Status: Open.

#5 In schneebergerlab/msyd;

· mnshgl0110 opened on Nov 8, 2022

Feature request: Check for correct reference in input

Status: Open.

#4 In schneebergerlab/msyd;

· mnshgl0110 opened on Nov 8, 2022