This is an exemplary downstream analysis for Spatial Transcriptomics data from NovaScope.
Please see detailed guidance at https://seqscope.github.io/NovaScope-exemplary-downstream-analysis.
Reference: Kim, Y., Cheng, W., Cho, CS. et al. Seq-Scope: repurposing Illumina sequencing flow cells for high-resolution spatial transcriptomics. Nat Protoc 20, 643–689 (2025). https://doi.org/10.1038/s41596-024-01065-0
DOI for this tool: Cheng, W., & Kang, H. M. (2026). NovaScope Exemplary Downstream Analysis (NEDA) (v1.0.0). Zenodo. https://doi.org/10.5281/zenodo.18291721