fix: corrected log file name to contain all wildcards

[cmeesters]

merely a naming issue to resolve all wildcards.

Summary by CodeRabbit

• Chores
  • Enhanced log file organization to better differentiate logs by file type, making it easier to identify and troubleshoot issues related to specific file types during data processing workflows.

[coderabbitai]

Caution

Review failed

The pull request is closed.

Walkthrough

Modified the gunzip rule in the Snakemake workflow to include the {filetype} component in the log file path. This changes log file naming from logs/gunzip/{database}_{dataset}_{name}.log to logs/gunzip/{database}_{dataset}_{name}_{filetype}.log, enabling per-filetype log differentiation.

Changes

Cohort / File(s)	Summary
Log path update workflow/rules/preparation.smk	Updated gunzip rule log filename to include {filetype} component for differentiated per-filetype logging

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~2 minutes

Poem

🐰 Logs now sorted, neat and clean,
Filetypes tagged in each routine,
Gunzip hops with organized care,
Each file finds its logged pair! 📋

✨ Finishing touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Post copyable unit tests in a comment
• Commit unit tests in branch fix/gunzip_logfile

---

📜 Recent review details

Configuration used: CodeRabbit UI

Review profile: CHILL

Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between b955211 and ad93149.

📒 Files selected for processing (1)

• workflow/rules/preparation.smk (1 hunks)

---

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

_{Comment @coderabbitai help to get the list of available commands and usage tips.}