GitHub - suetli19/Bioinformatics-package-installation-and-sample-processing: Here's the scripts for bioinformatics packages installations and example workflow of running samples using the installed package in R, Python and Bash.

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Here's the scripts for bioinformatics packages installations and example workflow of running samples using the installed package in R, Python and Bash.

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Name		Name	Last commit message	Last commit date
Latest commit History 46 Commits
MetaPhlAn-4.0.6/MetaPhlAn-4.0.6		MetaPhlAn-4.0.6/MetaPhlAn-4.0.6
AWS CLI installation in Ubuntu		AWS CLI installation in Ubuntu
Biobakery4 - Kneaddata > Metaphlan4.0.6 > Humann3.8		Biobakery4 - Kneaddata > Metaphlan4.0.6 > Humann3.8
Docker set up documentation		Docker set up documentation
Dockerfile_humann		Dockerfile_humann
Dockerfile_jj		Dockerfile_jj
Dockerfile_kneaddata		Dockerfile_kneaddata
Dockerfile_metaphlan4		Dockerfile_metaphlan4
Gapseq_installation		Gapseq_installation
Gapseq_testing		Gapseq_testing
Graphlan		Graphlan
PAPRICA_16S		PAPRICA_16S
Trimming_fastq		Trimming_fastq
Ubuntu and Conda installation		Ubuntu and Conda installation
dada2_deunique_rev.py		dada2_deunique_rev.py
graphlan_colour.txt		graphlan_colour.txt
humann_join_tables.py		humann_join_tables.py
humann_renorm_table.py		humann_renorm_table.py
merge_metaphlan_tables_v4.py		merge_metaphlan_tables_v4.py
metaphlan4.0.1_jj.sh		metaphlan4.0.1_jj.sh
micop_run.sh		micop_run.sh
siamcat machine learning		siamcat machine learning

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Here's the scripts for bioinformatics packages installations and example workflow of running samples using the installed package in R, Python and Bash.