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Implement enzyme constraints with the help of a pseudo reaction and a pseudo metabolite. Remove cached files#5

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VonAlphaBisZulu wants to merge 4 commits intotibbdc:masterfrom
VonAlphaBisZulu:master
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Implement enzyme constraints with the help of a pseudo reaction and a pseudo metabolite. Remove cached files#5
VonAlphaBisZulu wants to merge 4 commits intotibbdc:masterfrom
VonAlphaBisZulu:master

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@VonAlphaBisZulu
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See title.
I also removed all files that were stored in the _cache folder. Some of them had special characters and caused problems with git syncing.

@VonAlphaBisZulu
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There hasn't been any news for a while on this Pull Request. I believe the proposed changes could benefit ECMpy and be appreciated by the community. Please consider testing and accepting.

@Melclic
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Melclic commented Aug 14, 2025

Hey @VonAlphaBisZulu, checkout this package: https://github.com/Melclic/BioPathOpt

I had some problems with this project and ended up rewriting a lot of it. Needs some love from the community to make sure it works well, but from the first pass it looks ok.

I didn't end up using the enzymatic pool concept you implemented, but would love to learn more

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2 participants