Repository for the NGS summer course at Aarhus university

Time-series RNA-Seq and data-driven network inference unveil dynamic cell phenotypes in Chronic Lymphocytic Leukaemia

Personal bioinformatics portfolio with projects on scRNA-seq, biomarker discovery, and gene/cell therapy analytics.

Command-line tool for fast, automated downloading of raw FASTQ files from ENA and/or GEO, supporting variety of NGS datasets, including bulk and single-cell RNA-seq.

Nextflow DSL2 pipeline for bulk mRNA-seq differential expression analysis using the limma-voom statistical framework with integrated batch correction, pathway analysis, and power assessment.

RNA sequencing, bioinformatics, and data analysis involved in the Itch project for Dr. Martha Bhattacharya's Lab at the University of Arizona