A Python package for common pre- and post-processing operations done by CFA Predict for short term forecasting, nowcasting, and scenario modeling.
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Jan 9, 2026 - Python
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infectious-disease-modeling
Here are 12 public repositories matching this topic...
Locally-hosted web application for visualization of hubverse formatted observations and model forecasts and for annotation of data and models.
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Jan 5, 2026 - Python
Materials for the in-person "Modelling for Pandemic Preparedness and Response" Modular Shortcourse
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Sep 1, 2025
A program to visualise simulations of an infectious disease spreading through a procedurally generated basic town.
visualization python procedural-generation simulation pygame epidemiology infection infectious-diseases sir-model infectious-disease-models epidemic-simulations coronavirus covid-19 seird-model infection-simulation infectious-disease-modeling
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Dec 31, 2025 - Python
Within Host Dynamics
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Nov 21, 2023 - C++
A replication in Python and PyRenew of a renewal model written in Epidemia for forecasting influenza hospital admissions.
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Jan 5, 2026 - Python
Python codes used for analyzing large datasets for machine learning, statistics, data cleaning and structuring, visualizations, etc.
machine-learning bioinformatics statistics genomics modeling machine-learning-algorithms epidemiology molecular-biology bioinformatics-scripts infectious-diseases antibiotic-resistance epidemiology-analysis epidemiology-models infectious-disease-modeling
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Jun 23, 2025 - Python
Using OPTICS clustering to group US states by Covid-19 trends in hospitalizations and other metrics.
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Jun 2, 2021 - Python
A curated list of awesome resources for infectious disease modeling.
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Jan 8, 2026
A TabNet-based, Bayesian-optimized pipeline for predicting typhoid fever diagnosis from Bangladeshi clinical biomarker data.
python machine-learning machine-learning-algorithms epidemiology bangladesh bayesian-optimization infectious-diseases infectious-disease-models tabnet infectious-disease-modeling typhoid-fever
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Dec 31, 2025 - Jupyter Notebook
Comprehensive collection of 8 clinical data science and health analytics projects focusing on disease prediction, risk stratification, and treatment pattern analysis using advanced machine learning algorithms and statistical modeling. Portfolio: https://nana-safo-duker.github.io/
python data-science machine-learning bioinformatics r jupyter-notebooks predictive-analytics medical-informatics precision-medicine cancer-detection health-analytics disease-prediction diabetes-prediction clinical-data-science cardiovascular-disease healthcare-ai infectious-disease-modeling treatment-adherence
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Nov 14, 2025 - Jupyter Notebook
This repository contains codes developed in 2022 to simulate the proposed Mobile Human Ad Hoc Network model to simulate the infectious disease spread based on airborne transmission.
epidemiology mobile-networks sir-model levy-walks molecular-communication infectious-disease-modeling truncated-levy-walk airborne-transmission
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Sep 20, 2024 - MATLAB
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