Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
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Nov 8, 2023 - Jupyter Notebook
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polyadenylation
Here are 9 public repositories matching this topic...
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
workflow bioinformatics rna-seq snakemake computational-biology bioinformatics-pipeline splicing polyadenylation
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Mar 27, 2024 - Python
Updated version of PAQR, which was previously available in the PAQR_KAPAC joint repository.
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Dec 7, 2022 - Python
Deep Neural Network model that predicts polyadenylation sites
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Apr 22, 2021 - Python
Extract set of tandem poly(A) sites from the PolyASite atlas.
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Feb 15, 2022 - Perl
hatpal is an R package for alternative polyadenylation (APA) identification & analysis using 3’ scRNA-seq (10x etc.).
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May 3, 2021 - R
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
workflow bioinformatics rna-seq snakemake computational-biology bioinformatics-pipeline splicing polyadenylation
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Updated
Aug 22, 2024 - Python
Snakemake workflow for SM-PATseq
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Dec 20, 2022 - R
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