Over the last few years code that has been developed in the Van Rooij lab was collected here.
If you are a member of the lab, to see a more elaborate explanation, and all available repositories, you need to log in to github, and make sure you are a member of our 'github team'. Ask the responisible person in the lab about this.
4DN chip-seq pipeline, inherited from ENCODE chip-seq pipeline
Files that collect some published resources, e.g. regarding TFs or L-R interactions.
This is the official repository for the Human Cell Atlas Heart project.
Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and StemID2 method including novel functionalities and performance improvements compared to the previous RaceID3/StemID2 version in the RaceID3_StemID2 repository. The RaceID3_StemID2 repository will not be updated …
R package for the inference of cell fate bias from single-cell RNA-seq data.
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