Ruff formatting and turn hashing into a subpackage

.gitignore

@@ -1,3 +1,6 @@
+# Ignore vscode settings
+.vscode/
+
 # Ignore example dataset storage generated in tutorial
 **/pod_data/
 

pyproject.toml

@@ -34,3 +34,6 @@ where = ["src"]
 
 [tool.setuptools_scm]
 version_file = "src/orcabridge/_version.py"
+
+[dependency-groups]
+dev = ["ruff>=0.11.11"]

src/orcabridge/__init__.py

@@ -1,4 +1,3 @@
-from .tracker import Tracker
 from . import hashing
 from . import pod
 from . import mapper
@@ -9,10 +8,11 @@
 from .pod import FunctionPod, function_pod
 from .source import GlobSource
 from .store import DirDataStore, SafeDirDataStore
+from .tracker import GraphTracker
 
 
 
-DEFAULT_TRACKER = Tracker()
+DEFAULT_TRACKER = GraphTracker()
 DEFAULT_TRACKER.activate()
 
 

src/orcabridge/dj/mapper.py

@@ -3,7 +3,6 @@
 from ..mapper import Mapper, Join, MapPackets, MapTags
 from typing import Optional
 import warnings
-from .source import QuerySource
 
 
 class QueryMapper(QueryOperation, Mapper):

src/orcabridge/dj/tracker.py

@@ -1,6 +1,6 @@
 from orcabridge.tracker import GraphTracker
 from datajoint import Schema
-from typing import List, Collection, Tuple, Optional, Any
+from typing import Collection, Tuple, Optional, Any
 from types import ModuleType
 import networkx as nx
 
@@ -13,7 +13,6 @@
 from .operation import QueryOperation
 from .pod import TableCachedPod
 from .mapper import convert_to_query_mapper
-import datajoint as dj
 import sys
 from collections import defaultdict
 

src/orcabridge/file.py

@@ -3,7 +3,7 @@
 import inspect
 import os
 from pathlib import Path
-from typing import Callable, Dict, Optional, Sequence, Tuple, Union
+from typing import Callable, Collection, Dict, Optional, Tuple, Union
 
 from orcabridge.types import Packet, PathSet
 

src/orcabridge/hashing/__init__.py

@@ -1,13 +1,14 @@
-from .hashing import (
+from .core import (
     hash_file,
     hash_pathset,
     hash_packet,
     hash_to_hex,
     hash_to_int,
     hash_to_uuid,
-    hash_function,
-    get_function_signature,
     HashableMixin,
+    function_content_hash,
+    get_function_signature,
+    hash_function
 )
 
 __all__ = [
@@ -19,5 +20,6 @@
     "hash_to_uuid",
     "hash_function",
     "get_function_signature",
+    "function_content_hash",
     "HashableMixin",
 ]