For information on installation and use of this code, please
refer to Code_Documentation.pdf in the Documentation directory.

Plots to make:
  *Plot of CMB velocity over time of year.  Maybe trap angle as
   well
  *Histograms for various distributions used to pick event times
  *Plots of z-position CDFs used for interpolation
  *Plot with time of day on y-axis and date on y-axis with blocks
    showing when the experiment was running, both for real data
    and for a random generated one.
  *CDF showing S distibution for fractional charges for each
    algorithm and period (output of 
    analysis.generate_Charman_histograms() )

to-do list:
  *Run simulations for many different charges
  *Decide how to pick quip direction for generate_event_times()
  *Correct for Daylight Savings time in shift times/run times data
  *Add code to calculate/plot the other correlation coefficients
    for z-position and speed/trap angle
  *Make Plots of CDFs with median/mean/mode of null CDF labeled
  *Figure out why signal_group.set_n_sets() can take so long (it
    has something to do with saving the signal group.  It's
    writing way too much data)

Low-priority to-do list:
  *Check if java/X is available before generating Charman histograms
    so that it doesn't produce errors when running without that
    ability.
  *Create a signal function that depends on theta_trap
  *Fix the recursive references of signal funciton handles to
    themselves, which causes their saved .mat files to be larger
    than they should be.
  *Have someone read the documentation?
  *Set up cluster to run 64 processes?
  *Figure out why Matlab graphics are so slow on server?
  *Install vim 7.4 on server?