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10 changes: 10 additions & 0 deletions R/mockDatasets.R
Original file line number Diff line number Diff line change
Expand Up @@ -23,6 +23,13 @@ mockCdmFromDataset <- function(datasetName = "GiBleed",
cn <- omock::mockDatasets$cdm_name[omock::mockDatasets$dataset_name == datasetName]
cv <- omock::mockDatasets$cdm_version[omock::mockDatasets$dataset_name == datasetName]




if (datasetName == "GiBleed") {
cli::cli_inform(c(i = "Loading bundled {.pkg {datasetName}} tables from package data."))
tables <- gibleed
} else {
# make dataset available
datasetPath <- datasetAvailable(datasetName)

Expand All @@ -41,6 +48,8 @@ mockCdmFromDataset <- function(datasetName = "GiBleed",
# delete csv files
unlink(x = tmpFolder, recursive = TRUE)

}

# add drug strength
cli::cli_inform(c(i = "Adding {.pkg drug_strength} table."))
if (datasetName == "GiBleed") {
Expand Down Expand Up @@ -549,3 +558,4 @@ attemptDownload <- function(url, destfile, datasetName,

out
}

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11 changes: 10 additions & 1 deletion data-raw/internalData.R
Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
library(dplyr)
library(here)
library(readr)
library(arrow)

# add the default mock vocabulary data
mockDrugStrength <- readr::read_csv(
Expand Down Expand Up @@ -150,6 +151,10 @@ namesTable <- dplyr::tribble(
NA
)

#read in giBleed
gibleed <- readTables(here::here("data-raw","GiBleed_5.3","GiBleed"), "5.3")


usethis::use_data(
mockDrugStrength,
mockConcept,
Expand All @@ -167,8 +172,10 @@ usethis::use_data(
eunomiaConceptSynonym,
namesTable,
cdmTable,
gibleed,
internal = TRUE,
overwrite = TRUE
overwrite = TRUE,
compress = "xz"
)

mockDatasets <- dplyr::tribble(
Expand Down Expand Up @@ -240,3 +247,5 @@ mockDatasets <- mockDatasets |>
dplyr::left_join(x, by = "dataset_name")

usethis::use_data(mockDatasets, overwrite = TRUE)