TRR Analysis script updates

[medha1996c]

Scripts for ChargeResolution using FF + NSB runs are added. Module added to reject bad_pixels, use per pixel per temperature gain (from SPE results by Halim) and FF coefficients using Anastasiia's script output.

[jlenain]

Thanks a lot, @medha1996c.
However, major changes are needed before this PR could be accepted: it re-implements a lot of classes already existing within nectarchain. Please let's avoid code duplication, and try to use the already existing implementations.

[codecov]

Codecov Report

❌ Patch coverage is 5.85586% with 209 lines in your changes missing coverage. Please review.
✅ Project coverage is 50.47%. Comparing base (0070b30) to head (df045fb).

Files with missing lines	Patch %	Lines
...rc/nectarchain/trr_test_suite/charge_resolution.py	0.00%	129 Missing ⚠️
src/nectarchain/trr_test_suite/tools_components.py	13.51%	64 Missing ⚠️
src/nectarchain/trr_test_suite/utils.py	15.78%	16 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #239      +/-   ##
==========================================
- Coverage   51.90%   50.47%   -1.44%     
==========================================
  Files          82       83       +1     
  Lines        6845     7067     +222     
==========================================
+ Hits         3553     3567      +14     
- Misses       3292     3500     +208     

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[jlenain]

Hi @medha1996c !
One last thing I was thinking about: would it be possible please to also implement some unit tests for the charge_resolution ?
Many thanks !

[jlenain]

Hi @medha1996c ,

The last push from yesterday mixes several PRs, I suspect this is due to a misbehaved rebase, is that correct? Please undo the last changes, rebase properly your branch onto main, and push again.

[jlenain]

Hi @medha1996c ! One last thing I was thinking about: would it be possible please to also implement some unit tests for the charge_resolution ? Many thanks !

Hi @medha1996c ,

Thanks for the last commits. Coming back to this: would it be possible please to implement some unit tests, especially for the ChargeResolutionTestTool class ? Many thanks !

[jlenain]

There is an inconsistency here: the model for the flat-field is declared as int, though taking None as default value.

When testing the integration of this test within the TRR GUI, this (correctly) fails with the following error:

/home/jlenain/local/src/python/cta-observatory/ctapipe_io_nectarcam/src/ctapipe_io_nectarcam/__init__.py:42: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.
  from pkg_resources import resource_filename
usage: charge_resolution.py [-h] [-r RUN_FILE] [-e EVTS] [-o OUTPUT]
                            [-t TEMPERATURE] [-ff FF_MODEL]
charge_resolution.py: error: argument -ff/--ff_model: invalid int value: 'None'