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Added dependency checks for fastANI #9

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Added dependency checks for fastANI #9

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81da89d
Add a check for fastANI
maxlcummins Mar 18, 2022
3ed6e98
Add a dependency check for fastANI
maxlcummins Mar 18, 2022
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9 changes: 9 additions & 0 deletions scripts/fastani_in_parallel.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,15 @@
# more details. You should have received a copy of the GNU General Public License along with
# Bacsort. If not, see <http://www.gnu.org/licenses/>.

# Check for fastANI
if command -v fastANI >/dev/null 2>&1 ; then
echo "fastANI found"
echo "version: $(fastANI -v)"
else
echo "Error: fastANI not found - please install fastANI and try again"
exit
fi

mkdir -p tree

printf "\n"
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9 changes: 9 additions & 0 deletions scripts/fastani_with_slurm.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,15 @@
# more details. You should have received a copy of the GNU General Public License along with
# Bacsort. If not, see <http://www.gnu.org/licenses/>.

# Check for fastANI
if command -v fastANI >/dev/null 2>&1 ; then
echo "fastANI found"
echo "version: $(fastANI -v)"
else
echo "Error: fastANI not found - please install fastANI and try again"
exit
fi

group_count=32

mkdir -p tree
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