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Black lines in pixel-decoded images

Status: Open.

#58 In seqscope/ficture;

· stsai7 opened on Feb 4, 2026

Tiny issues with reference mapping

Status: Open.

#57 In seqscope/ficture;

· stsai7 opened on Feb 4, 2026

3D Data Support?

Status: Open.

#56 In seqscope/ficture;

· yuqih25 opened on Nov 5, 2025

Not able to use map function (like in FICTURE) in punkst for reference-based mapping

Status: Open.

#54 In seqscope/ficture;

· sabir-yas opened on Sep 11, 2025

Regarding the Stereo-seq issue

Status: Open.

#52 In seqscope/ficture;

· drdoufeiyue-ctrl opened on Aug 13, 2025

Applying the model from one sample to another

Status: Open.

#50 In seqscope/ficture;

· camelest opened on Aug 6, 2025

integration hexagon count matrix and decoded factor matrix

Status: Open.

#46 In seqscope/ficture;

· dahun73 opened on May 30, 2025

How do I actually use an external model?

Status: Open.

#45 In seqscope/ficture;

· jeremymchacon opened on May 16, 2025

make_dge yields empty output file

Status: Open.

#42 In seqscope/ficture;

· florensas opened on Apr 22, 2025

Batch correction options when running across multiple samples

Status: Open.

#33 In seqscope/ficture;

· Nick-Eagles opened on Mar 7, 2025

error when running example dataset(KeyError: 'SIZE_X')

Status: Open.

#31 In seqscope/ficture;

· jinyuanchun opened on Mar 6, 2025

How to create a boundray to filter non-tissue region?

Status: Open.

#29 In seqscope/ficture;

· falsetry1514 opened on Feb 6, 2025